PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_0BB0A30D1.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 323aa    MW: 35567.8 Da    PI: 6.3505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_0BB0A30D1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10154202355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Traes_4AL_0BB0A30D1.2 154 NSHSLAERLRRKKISEKMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 202
                            58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.38E-11149206No hitNo description
SuperFamilySSF474595.63E-17149218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-8154202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYSGQQSDQG PAANSGKEFL EGNWGSVAMH QKMGYDSAAY GFQAYGMELE ERPGLYRSSA  60
GAFSQNIQMS DEHSGGVKKR KGTDDCIALL NPSASSKNVG DQQTEVSSQP ERNSVERDNR  120
KISPKTQSKE DSSDGDGTKE NYVHFRAKRG QATNSHSLAE RLRRKKISEK MKLLQDLVPG  180
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELG FDIEQILSKQ MMLSQDRHLG  240
FYGADPGSSA LIAHFNQGMM HPDMMCNASN PAGALHGTIH DISMMNQMPE MWETLQNIPH  300
MNFNPAVAAD SSTNNAGPVK IEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198221.10.0transcription factor bHLH49-like
RefseqXP_020198222.10.0transcription factor bHLH49-like
RefseqXP_020198223.10.0transcription factor bHLH49-like
TrEMBLA0A3B6I0A30.0A0A3B6I0A3_WHEAT; Uncharacterized protein
TrEMBLA0A446R7D80.0A0A446R7D8_TRITD; Uncharacterized protein
STRINGTraes_4AL_0BB0A30D1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-56bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]