PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_0A3D7BB7F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 387aa    MW: 43698.4 Da    PI: 6.8785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_0A3D7BB7F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.31.2e-75637448374
                   GRAS  48 ALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaL 132
                             La+rl+   ++ ++al  ps+    +++   +a++ f  +sP+l  +++t N+a+le v+ ++ v i+D++ s  ++ QW+ +l+ +
  Traes_4AL_0A3D7BB7F.1   6 SLARRLLCPIQGFAAALiDPSRYL--EQACLRSARENFASISPYLSTGFVTINRAMLEQVQDQKVVRIVDLSCSttHPWQWLKILHDF 91 
                            566666665555554442222222..34445567788**********************************8643389********** PP

                   GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll.. 214
                              Rp+gpp+lR+T+v++    ++e l +++  L + A++l++ f f+  v  +le+l++++L    +++ gEa++++++lq+hrll  
  Traes_4AL_0A3D7BB7F.1  92 HGRPGGPPELRLTVVHE----DSEFLDNMQALLCRQAANLKLCFYFDK-VIGKLETLDFSNLreilKINFGEAVVISCALQMHRLLav 174
                            *****************....9**************************.688999999998843335555****************** PP

                   GRAS 215 .........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                                                                     + + +++s   ++L++++ l+Pk++v++eq+adhn++ F +rf++++
  Traes_4AL_0A3D7BB7F.1 175 ddsvsrdgiaqlqqmanmarlkqmacsacspastlnypqtpSPQRQIPSLLVSFLSAIRALEPKIIVMMEQDADHNAPLFHDRFTKTV 262
                            **************************************998667777778899*********************************** PP

                   GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                            +yy+alfdsl+a   ++s +r+ vEr+llg+ei+n++ ceg +r erhe+l++W++ ++++    vpls +a  + k  l  ++ +  
  Traes_4AL_0A3D7BB7F.1 263 DYYAALFDSLNAV-DSASPQRARVERVLLGEEIKNILVCEGVQRLERHEKLSQWEMHMQRCEVDHVPLSFEAIREGKERLMSYGLKQC 349
                            **********887.7999******************************************************************888* PP

                   GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                            + +e+++ l+l+W   +L+s+SaWr
  Traes_4AL_0A3D7BB7F.1 350 KSDEDNADLLLCWGATRLYSISAWR 374
                            ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.1051354IPR005202Transcription factor GRAS
PfamPF035144.2E-736374IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MIIADSLARR LLCPIQGFAA ALIDPSRYLE QACLRSAREN FASISPYLST GFVTINRAML  60
EQVQDQKVVR IVDLSCSTTH PWQWLKILHD FHGRPGGPPE LRLTVVHEDS EFLDNMQALL  120
CRQAANLKLC FYFDKVIGKL ETLDFSNLRE ILKINFGEAV VISCALQMHR LLAVDDSVSR  180
DGIAQLQQMA NMARLKQMAC SACSPASTLN YPQTPSPQRQ IPSLLVSFLS AIRALEPKII  240
VMMEQDADHN APLFHDRFTK TVDYYAALFD SLNAVDSASP QRARVERVLL GEEIKNILVC  300
EGVQRLERHE KLSQWEMHMQ RCEVDHVPLS FEAIREGKER LMSYGLKQCK SDEDNADLLL  360
CWGATRLYSI SAWRPHSSNA APNKVAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-28337762381Protein SCARECROW
5b3h_D3e-28337762381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759190.0AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187419.10.0scarecrow-like protein 3
RefseqXP_020187421.10.0scarecrow-like protein 3
RefseqXP_020187422.10.0scarecrow-like protein 3
TrEMBLA0A3B6HVK20.0A0A3B6HVK2_WHEAT; Uncharacterized protein
TrEMBLA0A446R1Q80.0A0A446R1Q8_TRITD; Uncharacterized protein
STRINGTraes_4AL_0A3D7BB7F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-67scarecrow-like 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]