PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_04B7D5758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 649aa MW: 72707.8 Da PI: 5.2003 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315.7 | 1e-96 | 270 | 640 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 + lLl cA+ v++g+ + a +lL++++++as +gd+ qRla +f+++L+arla+++s++yk+l +++ts + e l+ ++lf ++ Traes_4AL_04B7D5758.1 270 RGLLLCCAQEVATGNRHGAGNLLKQIRQHASATGDAAQRLAYCFAKGLEARLAGTGSQVYKSLMAKHTS---TMEFLKGYELFMAACS 354 679*************************************************************99999...899************* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 + ++++ +I +aveg++++Hi+D+++ +G QWp Ll La+R++gpp++RiTg++ p++g +++leetg+ L++ A+++g+p Traes_4AL_04B7D5758.1 355 FKRVAFTFSSMTIFDAVEGKSKLHIVDYGLHYGCQWPGLLAWLATRDGGPPEVRITGIDLPQPGfrPAKRLEETGRALSNCARQFGLP 442 ***************************************************************9************************ PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 f+f++ +a ++e+++ e+L+++p+E+l+Vn ++ +l+des+ ++ +rd vL+ +++++P+v+v + + ++ Fl+rf eal Traes_4AL_04B7D5758.1 443 FKFHA-IAAKWETIRAEDLNIDPDEVLVVNDLFNFNTLMDESLVIDRpsPRDVVLSNIREMQPDVFVQGVVNGSS-GPFFLARFREAL 528 *****.799*********************************98877669****************999888776.89********** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 +ys++fd+l+++ p+es er ++Er ++g+ + n +ace a+r+er et+++W+ r ++a ++++pl+ ++k a ++ + +++ Traes_4AL_04B7D5758.1 529 FFYSSVFDMLDTTTPPESYERFVLERDMFGQCALNTIACESADRVERPETYKQWQLRNQRASLRQLPLKPIITKVATGKVKSLYHKEF 616 ************************************************************************************999* PP GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373 v+ ++g+l++gWk+r L++ SaW Traes_4AL_04B7D5758.1 617 VVDVDQGWLLQGWKGRILYAHSAW 640 ************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.748 | 243 | 621 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-94 | 270 | 640 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MPIAPEELLG LKEHMEPPPP SPSVYLDIPP SPYGGSVGDL VLPYITRMLM EEDIDDRFFY 60 QYPDHLAFLQ AQQQFTQILD DAKNLLSGEG GDMEKMHSDA SLQGIRGGSM CLADKDVPSW 120 TFSDGAEVYN NGDQSKLNRS NEAMLNFAFL KGMEEANKFL PRDNQPQADV FSVDQAKEIF 180 GRSISGGGRK GQRDVDKLEE VVGRASKLLM PELEEDGASE MINKIMLNSY ELCGETMEEL 240 QITMENIRAD RKNKKAVRGK QGKKEAVDLR GLLLCCAQEV ATGNRHGAGN LLKQIRQHAS 300 ATGDAAQRLA YCFAKGLEAR LAGTGSQVYK SLMAKHTSTM EFLKGYELFM AACSFKRVAF 360 TFSSMTIFDA VEGKSKLHIV DYGLHYGCQW PGLLAWLATR DGGPPEVRIT GIDLPQPGFR 420 PAKRLEETGR ALSNCARQFG LPFKFHAIAA KWETIRAEDL NIDPDEVLVV NDLFNFNTLM 480 DESLVIDRPS PRDVVLSNIR EMQPDVFVQG VVNGSSGPFF LARFREALFF YSSVFDMLDT 540 TTPPESYERF VLERDMFGQC ALNTIACESA DRVERPETYK QWQLRNQRAS LRQLPLKPII 600 TKVATGKVKS LYHKEFVVDV DQGWLLQGWK GRILYAHSAW VADDTSSEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-39 | 276 | 641 | 25 | 378 | Protein SCARECROW |
5b3h_D | 8e-39 | 276 | 641 | 25 | 378 | Protein SCARECROW |
5hyz_A | 8e-39 | 273 | 640 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172175.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A3B6HTL8 | 0.0 | A0A3B6HTL8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R0D0 | 0.0 | A0A446R0D0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_04B7D5758.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-140 | GRAS family protein |
Publications ? help Back to Top | |||
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