PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_3DS_F6B1E6078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 63aa MW: 7753.04 Da PI: 10.8655 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.2 | 1.6e-23 | 23 | 62 | 1 | 40 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkver 40 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver Traes_3DS_F6B1E6078.1 23 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVER 62 59*************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.7E-25 | 8 | 62 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-21 | 15 | 62 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.136 | 18 | 63 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-15 | 23 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-18 | 24 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 63 aa Download sequence Send to blast |
AKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPRSYYRCT QDKCRVKKRV 60 ERL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-18 | 14 | 62 | 8 | 56 | Probable WRKY transcription factor 4 |
2lex_A | 3e-18 | 14 | 62 | 8 | 56 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036900 | 1e-84 | BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds. | |||
GenBank | EU963646 | 1e-84 | EU963646.1 Zea mays clone 265112 mRNA sequence. | |||
GenBank | KJ726908 | 1e-84 | KJ726908.1 Zea mays clone pUT3453 WRKY transcription factor (WRKY45) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455053.2 | 8e-42 | probable WRKY transcription factor 12 | ||||
Refseq | XP_020149424.1 | 4e-42 | probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 3e-38 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A3B6GMP6 | 3e-41 | A0A3B6GMP6_WHEAT; Uncharacterized protein | ||||
STRING | Sb03g003640.1 | 3e-41 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-40 | WRKY DNA-binding protein 13 |