PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_E799374CA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 126aa    MW: 14475.5 Da    PI: 10.5085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_E799374CA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.7e-2268558128
                    NAM  58 wyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             +fF++ +k+y+tg+rk+r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Traes_3DS_E799374CA.1   6 KHFFHRPSKAYTTGTRKRRKiqtecdvhKGETRWHKTGKTRPVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 85 
                            69*****************75666664433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6561104IPR003441NAC domain
SuperFamilySSF1019416.28E-252104IPR003441NAC domain
PfamPF023653.2E-8785IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDGLSKHFFH RPSKAYTTGT RKRRKIQTEC DVHKGETRWH KTGKTRPVMA NGRQKGCKKI  60
LVLYTNFGKH RKPEKTNWVM HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSASSDRGG  120
AGGAVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-178HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190512.16e-89uncharacterized protein LOC109776267 isoform X2
SwissprotQ9M0F84e-68NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A287KBY83e-91A0A287KBY8_HORVV; Uncharacterized protein
TrEMBLA0A446N7289e-90A0A446N728_TRITD; Uncharacterized protein
TrEMBLA0A453E6963e-91A0A453E696_AEGTS; Uncharacterized protein
STRINGTraes_3AS_74E386CE7.17e-90(Triticum aestivum)
STRINGTraes_3B_9683142DA.14e-89(Triticum aestivum)
STRINGTraes_3DS_E799374CA.16e-91(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3177944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.14e-58NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]