PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_DF23FE973.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 104aa MW: 12012.5 Da PI: 12.1749

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_DF23FE973.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	28	72	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky Traes_3DS_DF23FE973.1 28 PWTEHEHRLFLLGLKKYGRGDWRNISRNFVQTRTPTQVASHAQKY 72 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.151	21	77	IPR017930	Myb domain
SuperFamily	SSF46689	1.5E-17	23	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-17	25	75	IPR006447	Myb domain, plants
SMART	SM00717	1.2E-11	25	75	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-12	27	71	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-11	28	72	IPR001005	SANT/Myb domain
CDD	cd00167	4.26E-11	28	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
QARRRFGVGC GNWHGVRTPE RGRRRGVPWT EHEHRLFLLG LKKYGRGDWR NISRNFVQTR 60 TPTQVASHAQ KYFIRLSSGV ARRSSIHDIT TVHLTDDQPP APSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951954	1e-176	JF951954.1 Aegilops tauschii clone TaMYB71 MYB-related protein mRNA, complete cds.
GenBank	KU857038	1e-176	KU857038.1 Triticum aestivum GID2 protein isoform 3 (gid2) mRNA, complete cds.
GenBank	KU857043	1e-176	KU857043.1 Aegilops tauschii GID2 protein (gid2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200806.1	4e-71	F-box protein GID2-like
Swissprot	Q8S9H7	3e-40	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M8BUC9	5e-70	M8BUC9_AEGTA; F-box protein GID2
STRING	EMT28630	9e-71	(Aegilops tauschii)
STRING	Traes_3DS_DF23FE973.1	2e-71	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-40	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]