PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_DCAECA274.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 395aa MW: 44469.2 Da PI: 7.4455

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_DCAECA274.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	168	189	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ff r G C +G++C+F+H+ Traes_3DS_DCAECA274.1 168 EMCVFFVR-GSCTRGNTCPFSHS 189 67999999.*************7 PP
2	zf-CCCH	21.2	5e-07	195	217	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ff+ C+ G++C+F+H+ Traes_3DS_DCAECA274.1 195 PVCKFFLTLQGCRNGSSCSFSHD 217 78********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.089	164	191	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.013	164	190	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	166	189	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-5	167	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.074	192	218	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.281	192	219	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	195	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-4	196	217	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	197	217	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MFKDKYRQEY LKMVADTQEP TAYHAFISKQ EEVWCAFHNL LPAALNNISE IYDDVMCTLH 60 RFRPSFLVEI DPPKYLQPSE FHHVCLHHKV LEPEDMNSLS LESESSHLGS QRKCAATPYV 120 SATDFGVTLT VVVLKALIKE MKTQLAEDKV VSCRERVSGY AQQTVESEMC VFFVRGSCTR 180 GNTCPFSHSA RAPKPVCKFF LTLQGCRNGS SCSFSHDCGS LNSKTSSITS GICSQEDVPT 240 AVCCAKLLPA GGDGHVLIMN DKNLQFSYKI CHYYDPTKIV TCTPGLHSVE SSSVTNGIMI 300 LQNVADPCRL ILGGERKLPV AWAKLQRVFW FADFDSDESM NERVLLQKFF EHIAIKTLSE 360 TLPNLQVVLI MNNTKFVHLQ VCHFLKAKYT AKNYF

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MFKDKYRQEY LKMVADTQEP TAYHAFISKQ EEVWCAFHNL LPAALNNISE IYDDVMCTLH  60
RFRPSFLVEI DPPKYLQPSE FHHVCLHHKV LEPEDMNSLS LESESSHLGS QRKCAATPYV  120
SATDFGVTLT VVVLKALIKE MKTQLAEDKV VSCRERVSGY AQQTVESEMC VFFVRGSCTR  180
GNTCPFSHSA RAPKPVCKFF LTLQGCRNGS SCSFSHDCGS LNSKTSSITS GICSQEDVPT  240
AVCCAKLLPA GGDGHVLIMN DKNLQFSYKI CHYYDPTKIV TCTPGLHSVE SSSVTNGIMI  300
LQNVADPCRL ILGGERKLPV AWAKLQRVFW FADFDSDESM NERVLLQKFF EHIAIKTLSE  360
TLPNLQVVLI MNNTKFVHLQ VCHFLKAKYT AKNYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354570	0.0	AK354570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1008I13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191083.1	0.0	zinc finger CCCH domain-containing protein 4
Swissprot	Q1EHT7	0.0	C3H4_ORYSJ; Zinc finger CCCH domain-containing protein 4
TrEMBL	A0A453EMF7	0.0	A0A453EMF7_AEGTS; Uncharacterized protein
STRING	Traes_3DS_DCAECA274.1	0.0	(Triticum aestivum)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kisiov VV,Kaiser RI Ab initio/Rice-Ramsperger-Kassel-Marcus study of the singlet C4H4 potential energy surface and of the reactions of C2(X1 Sigmag+) with C4H4(X1A1g) and C(1D) with C3H4 (allene and methylacetylene). J Chem Phys, 2006. 125(13): p. 133113 [PMID:17029439] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]