PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_D79D35637.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 426aa    MW: 45256.2 Da    PI: 7.2019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_D79D35637.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149e-053163541255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ ++++ L++++ +      +K + a++L +A+ YIk Lq
  Traes_3DS_D79D35637.1 316 RKEKLGDRIAALQQMVSPF-----GKTDTASVLMEAIGYIKFLQ 354
                            7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.829304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-5314358No hitNo description
SuperFamilySSF474596.41E-11314366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8318361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMASSSSSSD LSADHQLLQD DLPWPSSSLP PPLAPALHHA VGGNHHQWSQ PLMLEQLSSD  60
ELEALLSAQV HQHHSHSQLL AAPLTTNPHH QLSSLLMMQE LGFQWSSSCG AADGDSNETA  120
QDAVKEDAEL PGPLALPRPS SSSSMAYDDD MAVDGAVVLP SVNVSRLQKI PCPVAAGPFG  180
GRAEATLEML ASAKFCKSLL SCSQASSTVL LHNGGGTAPL LGMGEHHVAY GLPPPVHRLQ  240
GPSSILHTYN KMGVPAALLS GNGSALQAAA GRSSGGGSLH EEQQLQMVAV SSKKKARLLH  300
SRPATNNNIL PSFKVRKEKL GDRIAALQQM VSPFGKTDTA SVLMEAIGYI KFLQDQVETL  360
SGPYMRSAKH KKARTTQQRG LSDTGHQKEE AKVDLRSRGL CLVPLACTSY VTNENGIWAP  420
PNFRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153231.10.0uncharacterized protein LOC109738546
TrEMBLA0A3B6GND90.0A0A3B6GND9_WHEAT; Uncharacterized protein
TrEMBLA0A453DZP10.0A0A453DZP1_AEGTS; Uncharacterized protein
STRINGTraes_3DS_D79D35637.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.19e-40bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]