PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_BB7306A01.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 172aa MW: 19702.3 Da PI: 9.7948

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_BB7306A01.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.6e-10	2	39	8	45
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Traes_3DS_BB7306A01.1 2 RRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 39 8************************9877777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	9.025	1	41	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.53E-7	2	42	No hit	No description
Pfam	PF00170	7.8E-7	2	39	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	2	17	IPR004827	Basic-leucine zipper domain
SMART	SM00338	0.0037	2	58	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-8	2	44	No hit	No description
Pfam	PF14144	6.7E-33	81	154	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRRLAQNREA ARKSRLRKKA YVQQLENSRL KLTQLEQELQ RARQQGIFIS SSADQSHSMS 60 GNGALAFDTE YARWLEEHNR QVNELRAAVN ARAGDTELRS VVEKIMSHYD DIFKQKGNAA 120 KADVFHVLSG MWKTPAERCF LWLGGFRPSE LLKVCNAALC FTCSPSEYQN HL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424318	0.0	JX424318.1 Triticum monococcum TGA-type basic leucine zipper protein mRNA, complete cds.
GenBank	X56782	0.0	X56782.1 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type transcription factor).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164500.1	1e-109	transcription factor HBP-1b(c38) isoform X1
Refseq	XP_020164501.1	1e-109	transcription factor HBP-1b(c38) isoform X1
Swissprot	P23923	1e-110	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A446PPE3	1e-120	A0A446PPE3_TRITD; Uncharacterized protein
STRING	Traes_3DS_BB7306A01.1	1e-126	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29534	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.5	1e-82	TGACG motif-binding factor 6

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]