PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_930F3B5AD.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 217aa MW: 24256.4 Da PI: 9.0172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_930F3B5AD.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	16	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+rFhPtdee+++ yL++k+ + +++ ++i evd++k ePw+Lpkk+k +e+ewyf++++d+ky+tg r+n+atk+gyWk+tgk Traes_3DS_930F3B5AD.2 16 LPPGYRFHPTDEEIITSYLAPKILNPAFDA-TAIGEVDVNKNEPWELPKKAKMGENEWYFYCQKDRKYPTGIRTNQATKAGYWKTTGK 102 79*************************9.88***********99999******************************* PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ ++ l+g+kktLvfykgrap+gekt+Wvmheyrle Traes_3DS_930F3B5AD.2 103 DKEIVNPhcTSMLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 145 **9878888**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	10	180	IPR003441	NAC domain
PROSITE profile	PS51005	55.84	16	179	IPR003441	NAC domain
Pfam	PF02365	5.1E-28	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MADHLQVQQQ QQQLELPPGY RFHPTDEEII TSYLAPKILN PAFDATAIGE VDVNKNEPWE 60 LPKKAKMGEN EWYFYCQKDR KYPTGIRTNQ ATKAGYWKTT GKDKEIVNPH CTSMLIGMKK 120 TLVFYKGRAP SGEKTNWVMH EYRLEIGKQS TTGLPTAITN AASINASSKE YVVCRIFHKN 180 TGSGLSSMVS HEDVGTRPGN NDQGNGSGTT THKISSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-49	4	183	3	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-49	4	183	3	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-49	4	183	3	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-49	4	183	3	169	NO APICAL MERISTEM PROTEIN
4dul_A	6e-49	4	183	3	169	NAC domain-containing protein 19
4dul_B	6e-49	4	183	3	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819764	0.0	FR819764.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC019 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191194.1	1e-165	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	3e-77	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3B6GQM6	1e-163	A0A3B6GQM6_WHEAT; Uncharacterized protein
TrEMBL	A0A453DZZ6	1e-163	A0A453DZZ6_AEGTS; Uncharacterized protein
TrEMBL	M8CVU9	1e-163	M8CVU9_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRING	EMT27961	1e-164	(Aegilops tauschii)
STRING	Traes_3DS_930F3B5AD.2	1e-164	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-75	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]