PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DS_901181FDD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 863aa MW: 94353.5 Da PI: 4.8441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.4e-11 | 2 | 33 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 vk++G++ W+tIa+ ++ gR +kqc++rw+++l Traes_3DS_901181FDD.1 2 VKKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 33 9****************.*************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 39 | 81 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ Traes_3DS_901181FDD.1 39 KDAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 81 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.47E-9 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 24.383 | 1 | 37 | IPR017930 | Myb domain |
SMART | SM00717 | 0.036 | 1 | 35 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 1 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-9 | 2 | 33 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.79E-28 | 13 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-14 | 38 | 86 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.934 | 38 | 88 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.7E-14 | 39 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 41 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.42E-11 | 41 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 863 aa Download sequence Send to blast |
MVKKYGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKD AWTQEEEITL IHAHRMYGNK 60 WAELTKFLPG RTDNSIKNHW NSSVKKKIDS YMSSGLLAQV SRLPLIEHHA HFNSSPAITQ 120 QNSEDSDSNA AREVEDSSGC SQSSLAMVSC SQVQDTNLAL SCDLHVNADT SKTEARDSQS 180 SMCQEDYTST EGVASALSEV HCHASSSRFG PDKLLQQDIS QRMNLQMDID ETPGNSMFEN 240 NQTICSTSNN ERPMLQYEIA PDMPISVLTN VSGAEQKLHF MSEADFSSPN CLKSELWQEI 300 SFQSLLSGPD IVDADSLSRL NHHSDTHSSE ADTNFLAAPN PSHTSNPSSM MVAAYGQDPS 360 LSVPQSLISN GLSDAADEKS GEMQVSGSEM ITCMHDSFGD SEQFATPGST DGRHGASAII 420 ERIPEYGDKQ LTDAEEPAAS MAKEPPLAQG EAASDEKQDK GALFYEPPRF PSMDVPFVSC 480 DLVTSGDLQE YSPLGIRQLM RSTMSVTTPL RLWGSPTHDE SPDVVLKSAA KSFISTPSIL 540 KKRQRDLSSP TPEKRMERKS RTEQDSGVLG TSSVSAQTSC MHAIKDKAIV TESVFCTNRS 600 SSFKPLEKKL EFCDENKENL GESEQAKDGR NAQNNHTVDE HARGEQCSTA NMVNTNDEPL 660 ATVLVEHKGN DISDHGANAM YQKMNTNLEA LSACKEAFAK SKSGELIAEK SSPCIQMDYE 720 YVNILADTPG VKRGLESPSA WKSPWFIDMQ YKGSYFISPA DTTYDALGLM KRINVQSASA 780 LADAREVLAS GSQCGNKNFD EENKENIDAE NETGTGKPQN KIMAEARVLD FNECATPVRT 840 ADNSVGGSLT KSVSSPIPSS HLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-39 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-39 | 1 | 88 | 18 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996827 | 0.0 | HE996827.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_69800. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153262.1 | 0.0 | transcription factor MYB3R-1-like isoform X1 | ||||
TrEMBL | A0A3B6GP52 | 0.0 | A0A3B6GP52_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453EHT8 | 0.0 | A0A453EHT8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DS_901181FDD.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 2e-57 | Homeodomain-like protein |
Publications ? help Back to Top | |||
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