PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DS_81B8AB548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 59aa MW: 6995.09 Da PI: 10.8421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.2e-12 | 4 | 53 | 2 | 55 |
HHHHHHH.HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahner.ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+++n++ Er RR+r+N+++ +r ++P+ +K++Ka+i + Av YI +Lq Traes_3DS_81B8AB548.1 4 RASKNIVeERVRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 53 55666652799******************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.811 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-14 | 3 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-10 | 4 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 4 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-5 | 19 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
RATRASKNIV EERVRRRRLN EKLYAIRGVV PNITKMDKAS IIQDAVAYIE ELQEQERRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357294 | 1e-53 | AK357294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1049P14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186745.1 | 4e-32 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 2e-17 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A3B6GNJ1 | 7e-32 | A0A3B6GNJ1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3DS_81B8AB548.1 | 3e-33 | (Triticum aestivum) | ||||
STRING | TRIUR3_12568-P1 | 2e-31 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.3 | 9e-18 | bHLH family protein |
Publications ? help Back to Top | |||
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