PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_7CCB5ECD2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 100aa    MW: 12027.8 Da    PI: 10.7622
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_7CCB5ECD2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-20250856
                           -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           tk+q+  Le++F++++++s+++++ LA++l+L  rqV vWFqNrRa+ k
  Traes_3DS_7CCB5ECD2.1  2 TKDQTALLEDHFKEQSTLSHKQKASLARQLNLRPRQVEVWFQNRRARTK 50
                           89*********************************************98 PP
2HD-ZIP_I/II116.51.5e-37184690
            HD-ZIP_I/II  6 lskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                           l+k+q +lLE++F+e+++L++++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d++ Lkr++++l+een+rL++e ++Lr +
  Traes_3DS_7CCB5ECD2.1  1 LTKDQTALLEDHFKEQSTLSHKQKASLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCKLLKRCCETLTEENRRLHRELQHLR-A 84
                           79********************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-11156IPR001356Homeobox domain
SuperFamilySSF466894.6E-17159IPR009057Homeodomain-like
PROSITE profilePS5007116.957152IPR001356Homeobox domain
CDDcd000862.39E-11153No hitNo description
Gene3DG3DSA:1.10.10.601.3E-18250IPR009057Homeodomain-like
PfamPF000462.7E-17250IPR001356Homeobox domain
PROSITE patternPS0002702750IPR017970Homeobox, conserved site
SMARTSM003404.5E-195295IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-105285IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
LTKDQTALLE DHFKEQSTLS HKQKASLARQ LNLRPRQVEV WFQNRRARTK LKQTEVDCKL  60
LKRCCETLTE ENRRLHRELQ HLRALHHHQH HHPAAAFFIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-55HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188208.12e-65homeobox-leucine zipper protein HOX15-like
SwissprotA2Z4C41e-47HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-47HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A3B6GJL71e-65A0A3B6GJL7_WHEAT; Uncharacterized protein
STRINGTraes_3DS_7CCB5ECD2.18e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-37homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]