PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_67CAB7956.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 69aa MW: 7222.28 Da PI: 7.4148

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_67CAB7956.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.8e-07	5	20	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 GtCk+Gd C++ H++ Traes_3DS_67CAB7956.1 5 QGTCKFGDACRYFHPK 20 5*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.526	1	21	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	5	20	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
LMMLQGTCKF GDACRYFHPK PHAVNPALAP SGPVPGAMGQ QSNFLGTQPN FVGYPAVEGN 60 SFSGDLLLA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	4e-51	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154677.1	3e-37	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	1e-18	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A446NB82	7e-42	A0A446NB82_TRITD; Uncharacterized protein
STRING	Traes_3DS_67CAB7956.1	5e-44	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]