PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DS_3520D86D7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17946.7 Da PI: 10.0043 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.3 | 7.2e-54 | 16 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd e+++ yL +kv +k++++ +++ evd++k+ePw+Lp++++ +ekewyfFs++d+ky+tg r+nrat+ gyWkatgk Traes_3DS_3520D86D7.1 16 LPPGFRFHPTDVEIITAYLVPKVLKKPFDT-RAVGEVDLNKHEPWELPEMANMGEKEWYFFSQKDRKYPTGIRTNRATTVGYWKATGK 102 79***************************9.88***************9888999********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ + +l+g+kk+Lvfykgrapkgekt+W+mheyrle Traes_3DS_3520D86D7.1 103 DKEIFHPpTMSLIGMKKILVFYKGRAPKGEKTNWIMHEYRLE 144 ******988889****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-56 | 10 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.725 | 16 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MENHLQVQQQ QQQLKLPPGF RFHPTDVEII TAYLVPKVLK KPFDTRAVGE VDLNKHEPWE 60 LPEMANMGEK EWYFFSQKDR KYPTGIRTNR ATTVGYWKAT GKDKEIFHPP TMSLIGMKKI 120 LVFYKGRAPK GEKTNWIMHE YRLESGKAAD TQPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 3 | 143 | 2 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 3 | 143 | 2 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 3 | 143 | 2 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 3 | 143 | 2 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-50 | 3 | 143 | 2 | 142 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 3 | 143 | 2 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163987.1 | 1e-106 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 3e-71 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | N1R2N1 | 1e-105 | N1R2N1_AEGTA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | Traes_3DS_3520D86D7.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 6e-71 | NAC family protein |
Publications ? help Back to Top | |||
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