PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_3520D86D7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 154aa    MW: 17946.7 Da    PI: 10.0043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_3520D86D7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.2e-54161441129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtd e+++ yL +kv +k++++ +++ evd++k+ePw+Lp++++ +ekewyfFs++d+ky+tg r+nrat+ gyWkatgk
  Traes_3DS_3520D86D7.1  16 LPPGFRFHPTDVEIITAYLVPKVLKKPFDT-RAVGEVDLNKHEPWELPEMANMGEKEWYFFSQKDRKYPTGIRTNRATTVGYWKATGK 102
                            79***************************9.88***************9888999********************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++  + +l+g+kk+Lvfykgrapkgekt+W+mheyrle
  Traes_3DS_3520D86D7.1 103 DKEIFHPpTMSLIGMKKILVFYKGRAPKGEKTNWIMHEYRLE 144
                            ******988889****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-5610148IPR003441NAC domain
PROSITE profilePS5100552.72516154IPR003441NAC domain
PfamPF023651.6E-2717143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MENHLQVQQQ QQQLKLPPGF RFHPTDVEII TAYLVPKVLK KPFDTRAVGE VDLNKHEPWE  60
LPEMANMGEK EWYFFSQKDR KYPTGIRTNR ATTVGYWKAT GKDKEIFHPP TMSLIGMKKI  120
LVFYKGRAPK GEKTNWIMHE YRLESGKAAD TQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-5031432142NO APICAL MERISTEM PROTEIN
1ut4_B7e-5031432142NO APICAL MERISTEM PROTEIN
1ut7_A7e-5031432142NO APICAL MERISTEM PROTEIN
1ut7_B7e-5031432142NO APICAL MERISTEM PROTEIN
4dul_A7e-5031432142NAC domain-containing protein 19
4dul_B7e-5031432142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163987.11e-106NAC domain-containing protein 100-like
SwissprotQ9FLJ23e-71NC100_ARATH; NAC domain-containing protein 100
TrEMBLN1R2N11e-105N1R2N1_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGTraes_3DS_3520D86D7.11e-112(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.16e-71NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]