PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_2F11B975C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 82aa    MW: 9097.59 Da    PI: 10.2515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_2F11B975C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-09655554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++  E+ RR+r++   ++L +l+Pk  ++++  ++    L  A  YIk+L
  Traes_3DS_2F11B975C.1  6 KKDSEKERRQRMKALCDKLASLIPKEHNPHADTMTQLGSLDVAASYIKKL 55
                           5678*********************75777777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.137155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-11770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-5761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MILVEKKDSE KERRQRMKAL CDKLASLIPK EHNPHADTMT QLGSLDVAAS YIKKLKERVD  60
ELQHKKAAAQ AAATLRGVSG IS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2487467e-44AK248746.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7p01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190835.17e-52uncharacterized protein LOC109776586
TrEMBLA0A453DN041e-49A0A453DN04_AEGTS; Uncharacterized protein
TrEMBLA0A453DN063e-50A0A453DN06_AEGTS; Uncharacterized protein
TrEMBLA0A453DN232e-50A0A453DN23_AEGTS; Uncharacterized protein
TrEMBLA0A453DN271e-50A0A453DN27_AEGTS; Uncharacterized protein
TrEMBLA0A453DN421e-50A0A453DN42_AEGTS; Uncharacterized protein
TrEMBLM8D9T51e-50M8D9T5_AEGTA; Uncharacterized protein
STRINGEMT333112e-51(Aegilops tauschii)
STRINGTraes_3DS_2F11B975C.11e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-08bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]