PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_162123F0C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 279aa    MW: 30878.1 Da    PI: 8.9937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_162123F0C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36e-091181027
                           GGTS--TTTTT-SS-SSS CS
                zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                           ++tGtCk+G++Ck++H++
  Traes_3DS_162123F0C.2  1 MKTGTCKFGSNCKYHHPK 18
                           89**************96 PP
2zf-CCCH40.83.7e-133863227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           ++++C+++++tG+Ck+G++CkF+H++
  Traes_3DS_162123F0C.2 38 GEKECSYYMKTGQCKFGSTCKFHHPE 63
                           7899********************96 PP
3zf-CCCH39.31e-12191217127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C++++rtG Ck+G++Ck++H++
  Traes_3DS_162123F0C.2 191 PGQPECQYYMRTGDCKFGATCKYHHPR 217
                            5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006421.6E-6118IPR000571Zinc finger, CCCH-type
SMARTSM0035621118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014119IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-63663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8123664IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-103863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-63963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-54262IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319190218IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10192217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6194218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4196217IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH  60
HPEFGGVPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VVPGSYMPGS YTPMMLSSGM  120
IPLQGWSPYP ASVNPVASGG AQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN  180
NQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYMFSP FCLPLRPTTV  240
LKPLIFKSQS TSVIIFSIRM SLSRSIYQTD NPEEWHFTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.11e-171zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_020200472.11e-172zinc finger CCCH domain-containing protein 6-like isoform X2
SwissprotQ5NAW21e-151C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A3B6GUE80.0A0A3B6GUE8_WHEAT; Uncharacterized protein
STRINGTraes_3DS_162123F0C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-71C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]