PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_05E08500B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 718aa    MW: 81095.8 Da    PI: 8.5122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_05E08500B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-074982338
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                            W+++E   +++a +++G++ Wk+I++ +g  +++ 
  Traes_3DS_05E08500B.1 49 HWSKDELMHFYEAYRRHGKN-WKKISAVVG-SKSAD 82
                           6*****************99.*********.88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7464596IPR017884SANT domain
SuperFamilySSF466892.39E-95094IPR009057Homeodomain-like
PfamPF002493.6E-65084IPR001005SANT/Myb domain
CDDcd001677.05E-45081No hitNo description
PfamPF065845.9E-31493593IPR033471DIRP domain
SMARTSM011353.0E-37493594IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MGPAKGSGTI HKITIKRHED RQHHEDPTSS SNVKLKISQK RKRSDLDLHW SKDELMHFYE  60
AYRRHGKNWK KISAVVGSKS ADTVEALYYV HRTFLSLPER EGTARGFIAL AAGHDNALES  120
PSHRETDQMV RSSGKGRRRG EAAWQKENAA PNPHNAFTNQ EMRIAGFTSS FKKRYHGELV  180
RYISRHPVRK RTPRVPVLLP LGINATNKAN EEINNDGSSP DGSSGITEAK VVQGQTFLEI  240
KGTEDTEISQ SQQHLNLKKR RIQQSMDEGQ TSKVEPGTTM VAEKEGHNLS DYERLSRLFS  300
PEEMMVLDVL ESLVTVPNET SQAKINSPSG TCGKRISASS NTQEEGLSPV YQSKQTKQDS  360
DSSASAERKK RRKKLPDEEV LAEEQISSGN TSVIPQACQL DTTEQPSLNS DFEKEAIDIP  420
ESTANICAEV SPDAPMEIDP QISMSRKSKR KSKVQCKRNY VFCNEGADNL QAKKLLHCLS  480
SESLRRWCTY EWFYSAVDYP WFMNNEFVNY LNFAKLSHLS RLTRSEWSTI RSSLGKPRRF  540
SNHFLAVEKE KLEDYRQNVR KYYAELSDGL RDSLPTDLAR PFSVGQHVIV RHPSTRELAD  600
GKVVIMERDC YKVQFDSPDL GVDIIKDTDC MPVNWLDNLP DDLKKRSSLS NNAHRKPDFE  660
HIPELTSKES WGNIMNDISV PESSSSRQAS SSVGGELLPS KSTTICRSTL PPFHPLQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366374ERKKRRKKL
2367373RKKRRKK
3367374RKKRRKKL
4368372KKRRK
5368373KKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753660.0AK375366.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171718.10.0protein ALWAYS EARLY 3-like
RefseqXP_020171719.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A3B6GMD10.0A0A3B6GMD1_WHEAT; Uncharacterized protein
STRINGTraes_3DS_05E08500B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.24e-66DNA binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]