PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_FA8CAF2B5.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 701aa MW: 80239.9 Da PI: 7.3427 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 9.8e-13 | 1 | 59 | 37 | 99 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l+ ++g++W v+l +k ++ ++lt+GW +Fv +n L+e +f++F++d++++f +v+vf + Traes_3DL_FA8CAF2B5.3 1 MLKRSEGKTWVVEL--EKVDRCVFLTTGWPKFVVDNSLREYEFLLFRHDKKMDF--MVSVFGR 59 578899********..999999*************************9999999..9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.521 | 1 | 60 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-10 | 2 | 59 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-15 | 2 | 66 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 2 | 62 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-10 | 2 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MLKRSEGKTW VVELEKVDRC VFLTTGWPKF VVDNSLREYE FLLFRHDKKM DFMVSVFGRN 60 ACEKAVRSSG SAAQATESLE RKLPCDMLPT RKRGHSGDEL TKTINNLRQS HSLVMIPDQS 120 DTKIFPFQRS TKGNGHISPQ SFADIHLHEV DGLKDELKIY LLLKVPMDDD KAKVIAEVMS 180 RLHVDRVTVD LFCATLCLYK WDSDAAAEVL NTCRGKPQIP NQFLKQKLVL QFDFIKRELR 240 HFFPTGDDCP PQIRDSRESS LEEPNLSTQA LQNYLPAVKS KLVDDHELCD LSYKQKRRIV 300 KSRSQQISET PRRSPRLAHL KNSGGSIDSG LKEKPEVLES SPSSTIDQVE HRAGHACLLY 360 EKPEHVFEGD RQHAIGSLSQ DFKRLKRTRG KVGLSEKPQH NQENEEKIDQ GNNGEIFEEQ 420 VDRNAAETSE SFMGRDWIDP SPPTKSKLSS MIINELCLTW KPSVHTNSLE NVLLHIQCDN 480 FMKTITHVQG IIRSSPSDLH CAAIIEAVVQ KEILKWDSCL QDVDAQRVVI ALLEHAKKIK 540 EIHNFNMESR KEEFSTKLQD QLKWQLKELE SVCTSLEFDY KKVTCDGNIA VSTSQEQKKK 600 LHALQDEIKG LQQSMMMENE IQKLVHQVAE HESLVQKSLM ERVRVKTVLK SYKQVLAEVK 660 ERLASDELGL IDVDALVKVE MDNLRKEIEI SKGRLLNIIF K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165473.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q5JNA1 | 0.0 | Y1237_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A3B6GYQ4 | 0.0 | A0A3B6GYQ4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3DL_FA8CAF2B5.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13235 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 2e-10 | B3 family protein |
Publications ? help Back to Top | |||
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