PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_EA11AA497.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 185aa MW: 20445.3 Da PI: 8.083 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.4 | 1.4e-09 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG C yG +C+F+H++ Traes_3DL_EA11AA497.2 51 PGEVDCSFYIKTGSCMYGRTCRFNHPE 77 57899********************96 PP | |||||||
2 | zf-CCCH | 35.4 | 1.8e-11 | 121 | 145 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ ++CkF+H+ Traes_3DL_EA11AA497.2 121 GETVCDFYKKTGFCKFSEKCKFHHP 145 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.385 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-4 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 54 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 56 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 118 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 124 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEAPSSGGNE SENTATAEAA GHHGAVHDSV SAKKLAPVAL EHNSKGMPIR PGEVDCSFYI 60 KTGSCMYGRT CRFNHPERHI QASVVPGEML NPAAKFPPNF DFRVTHVPIE PEPITYPQRP 120 GETVCDFYKK TGFCKFSEKC KFHHPVDRSA PDSIAKWEPS QQPVTLIVAG FPRREGLRIC 180 PLFVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251631 | 0.0 | AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200959.1 | 1e-125 | zinc finger CCCH domain-containing protein 8 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 5e-66 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A453F1U5 | 1e-128 | A0A453F1U5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453F232 | 1e-128 | A0A453F232_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453F268 | 1e-128 | A0A453F268_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_EA11AA497.2 | 1e-136 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 4e-43 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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