PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_E22D9AEAE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 131aa MW: 14790.9 Da PI: 8.0577 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.4e-05 | 20 | 57 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A eYIk L Traes_3DL_E22D9AEAE.1 20 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 57 6678889999******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.763 | 8 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-8 | 18 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-10 | 19 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-4 | 20 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MTFGLHKNFF LCCALELQVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA NEYIKFLHDQ 60 VASLTYPYLK NVNPLQQFQQ KGSENAKDDG GEPKKDLRSR GLCLVPVATT YTVASETVPE 120 FWYPTFGGTF R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 7e-76 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181117.1 | 2e-78 | transcription factor UNE12-like isoform X2 | ||||
Swissprot | Q8GXT3 | 3e-38 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A446NRZ5 | 2e-78 | A0A446NRZ5_TRITD; Uncharacterized protein | ||||
TrEMBL | T1LR04 | 2e-78 | T1LR04_TRIUA; Uncharacterized protein | ||||
STRING | Traes_3DL_E22D9AEAE.1 | 2e-94 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-40 | bHLH family protein |
Publications ? help Back to Top | |||
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