PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_D4FBDA9DC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 343aa    MW: 38227.2 Da    PI: 9.7028
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_D4FBDA9DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.9e-081268157
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           +++R  ++++ ++ +++lF+ + ++ ++e +e+++ +gLt +qV+ +F  +R++ +k
  Traes_3DL_D4FBDA9DC.1 12 KKPRDLLNPKAVNSMQSLFAVKDTLGKRETREISALCGLTVTQVREFFASQRTRVRK 68
                           799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.815969IPR001356Homeobox domain
SMARTSM003894.7E-51173IPR001356Homeobox domain
SuperFamilySSF466891.15E-71272IPR009057Homeodomain-like
PfamPF000461.0E-51268IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-71276IPR009057Homeodomain-like
CDDcd000867.90E-51268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAGALSIKI GKKPRDLLNP KAVNSMQSLF AVKDTLGKRE TREISALCGL TVTQVREFFA  60
SQRTRVRKAV RLSREKALKL EASKTALKLE ASKTATNVCS LNTEQTPLDI ETHAQVVEPL  120
STLEPLEMFQ SSSQLAEAPQ SSLQQPEVQQ CTATPIPITP TGSIQPTDAK INPDSVQKET  180
KQEEVAPGVE SEDKKFLDSI FALMQKEETF SGQVKLMEWI LQINNATILS WFLTMGGLTI  240
VSTWLSQAAT EEQTTVILVI FKVLLHLPLH KALPAHMSVV LQTINRLRFY RTQDISGRAR  300
NLLSRLSKVL VRSQASKKPQ KDLICKQRIS EILHDESWKS EVD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607320.0AK360732.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179217.10.0homeobox protein LUMINIDEPENDENS
TrEMBLA0A453GGW30.0A0A453GGW3_AEGTS; Uncharacterized protein
STRINGTraes_3DL_D4FBDA9DC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-77HB-other family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]