PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_D03A43799.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 348aa MW: 37240.2 Da PI: 9.9261 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 321 | 344 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+++Fs+ L H r H Traes_3DL_D03A43799.3 321 HVCNSCNRTFSSLKGLGDHSRAkH 344 79************9999988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.6E-5 | 321 | 344 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.346 | 321 | 348 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 323 | 344 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MLATLSVDNH PHVLADLVFK REFELLHSSM TSNISFMGYK FDIIKRSHSC TKQGADSDEE 60 VPLAIPLDFN TDGYKNNEAT HGANNLIVPR PADAPSPIPK AKVEGTNSPG KRKGDDKDKT 120 GTQNSSDGVD NESSDQDVDY PRKKTKDDYN PMETPLNTPQ GKRAKIATPT TGNRTGYVHV 180 ATPHPAAKQA RKSGDHVHVA TPHPAAKQAG KSGDHVHVAT PHPAAKQAHK SGDHVHAATP 240 HPAAKQAHKS GDHVHVATPH PAAKQAHKSG DHVHVATPHP AAKQARKSGD HVHVATPHPA 300 AKHARKTPEN NDDKSKQSAG HVCNSCNRTF SSLKGLGDHS RAKHGDAK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368645 | 0.0 | AK368645.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163793.1 | 0.0 | histone deacetylase HDT3-like | ||||
TrEMBL | A0A453G9N0 | 0.0 | A0A453G9N0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_D03A43799.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 3e-08 | histone deacetylase 3 |
Publications ? help Back to Top | |||
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