PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_C77596863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 570aa MW: 61896.5 Da PI: 5.33 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 305 | 326 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+f++ G C+ G+ CkF+H+ Traes_3DL_C77596863.1 305 KLCHFYMH-GKCQQGNACKFSHD 326 79**8888.*************7 PP | |||||||
2 | zf-CCCH | 18.4 | 4e-06 | 332 | 354 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H Traes_3DL_C77596863.1 332 KSKPCTHFAR-GSCLKGDDCPYDH 354 6789******.************* PP | |||||||
3 | zf-CCCH | 22.3 | 2.4e-07 | 360 | 381 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ Traes_3DL_C77596863.1 360 PCHNFVENGMCFRGDKCKFSHV 381 7********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.187 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0072 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 305 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 329 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 330 | 356 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.281 | 330 | 357 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 332 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 358 | 382 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 359 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 360 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 360 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 360 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MEHQVAGGQX RYMEHQVAGV QRVEGVTDMV VGGNVCRETV ALLEELGAED VLRSMKDCLE 60 GEVDELAEPG VVVVNDDEHL LLDTMMTNFS GLIADASGGT TSMLNYGVSG GEPHNDGNIA 120 EGVKELGAGT EEDRPMGDSD QHSVDGGVVE EGEIEGDMQA LDVDESDDSE LEDADDEELG 180 EDFANRVLGE NESSGQDIRC LNLLSTPKIK GTSDLVLNKE GYIKDDALKH VTRAQAVSYD 240 EIVEWNETPL PDTEAPKPGK RKRHLTEERK AKKTKNKRVK RAQQRIADGV KRLKLAPVIK 300 PKPVKLCHFY MHGKCQQGNA CKFSHDTTPL TKSKPCTHFA RGSCLKGDDC PYDHELSKYP 360 CHNFVENGMC FRGDKCKFSH VVPTADGPSK PDAKKSDASL VSEKPGREQT SSQKASTVHD 420 GERVTSAPTK HYSILKNLAG ISVNALKAST GTPKGVQFRP SSKDRSNSSM LHQDALPIEK 480 HMYTNGSKHQ NFGGPQAEEG DKNGIPNKQR SAPLFDEKNS SKEASSHPSS DPERTSLPTG 540 STTVLGSLST QHEVSEASRI LQEFLFGAGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365851 | 0.0 | AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184316.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184317.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184318.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184319.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184320.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A3B6GT47 | 0.0 | A0A3B6GT47_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3DL_C77596863.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 3e-07 | C3H family protein |
Publications ? help Back to Top | |||
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