PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_C686CE2E3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 309aa    MW: 35046.6 Da    PI: 8.462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_C686CE2E3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.2e-35341762128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                            p+G++F+Ptd+el+ e+L+ k+ ++ ++l +    +i+   +i++++P++Lp  v+ + ++ +fF++ +k+y+tg+rk+r+       
  Traes_3DL_C686CE2E3.2  34 PAGVKFDPTDQELI-EHLESKMMKRAHSLIDdfipTIEGEdGICYTHPEKLP-GVTRNGQSKHFFHRPSKAYTTGTRKRRKihaesel 119
                            89************.99****999996554422223555545**********.555667899******************87889888 PP

                    NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  ++ +W++tgk++++++ +g+++g+kk+Lv+y   g+a+k+ekt+Wvmh+y+l
  Traes_3DL_C686CE2E3.2 120 snsknGAETRWHKTGKTRPLMV-DGRHKGCKKILVLYsnFGKARKPEKTNWVMHQYHL 176
                            8866544678************.999***********544799*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-3627195IPR003441NAC domain
PROSITE profilePS5100532.233195IPR003441NAC domain
PfamPF023651.2E-1534176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MIDAKLQEQG FFASQHCVNC GHELDYKPDM VGFPAGVKFD PTDQELIEHL ESKMMKRAHS  60
LIDDFIPTIE GEDGICYTHP EKLPGVTRNG QSKHFFHRPS KAYTTGTRKR RKIHAESELS  120
NSKNGAETRW HKTGKTRPLM VDGRHKGCKK ILVLYSNFGK ARKPEKTNWV MHQYHLGDLE  180
DEKEGELIVS KVFYQTQPRQ SAAATTSTVF HEPSTNGDME VKTPKSMKIG LTDYAVVAAA  240
AIQMQRQQQQ MLKQGDEMNK GKEGQDQQQQ KFDHRPAGLE GLIMACKSAS TKEGTSTTQP  300
EDMQWPYQY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644300.0FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156234.10.0NAC domain-containing protein 73-like
RefseqXP_020156242.10.0NAC domain-containing protein 73-like
SwissprotQ9M0F81e-106NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3B6GXG90.0A0A3B6GXG9_WHEAT; Uncharacterized protein
TrEMBLA0A453G0280.0A0A453G028_AEGTS; Uncharacterized protein
TrEMBLA0A453G0340.0A0A453G034_AEGTS; Uncharacterized protein
STRINGTraes_3DL_C686CE2E3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-100NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]