PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_C5832B670.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 329aa MW: 37145.7 Da PI: 4.9031

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_C5832B670.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	71.9	1.2e-22	1	64	29	101
EES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 29 vvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 vv+d ++f++ +Lp++Fkhsnf+SFv+QLn+YgF+kv+ ++ weF+++ F +g+++ll++i+r++ Traes_3DL_C5832B670.1 1 VVWDLHHFSTVLLPRHFKHSNFSSFVKQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNIRRRR 64 69**********************************999.........*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-22	1	63	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.7E-24	1	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.12E-20	1	63	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.6E-19	1	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-9	12	24	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-9	25	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
VVWDLHHFST VLLPRHFKHS NFSSFVKQLN TYGFRKVDPD RWEFANEGFL RGQRHLLKNI 60 RRRRPPANTA PNQQSLGSYL EVGHFGNHTD TDQLKRDKQL LMAEVVKLRQ EQQSMKTHLK 120 GMEERLRGTE RKQQQMTAFL ARVFRNPELL KQLISLNGVR KELHDAMSKK RRRNIDQGPE 180 ADDMGASGSL EQESPVLSDP YESVELLGEV SVELLADGVP PELESSVALL ADGIPPDLEG 240 AAELLVDVIP SDLNDSGIDT DGVKPQDFGL GTCEVQQNRA QGVLHDDFWE ELMSRALSEE 300 DDSPVNLDDM DALSEKMDFL VPNSPTRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	63	RGQRHLLKNIRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187935.1	0.0	heat stress transcription factor A-2b-like
Swissprot	Q6VBB2	1e-135	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A453G6V3	0.0	A0A453G6V3_AEGTS; Uncharacterized protein
STRING	Traes_3DL_C5832B670.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-65	heat shock transcription factor A6B

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]