PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_BF7D83705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 82aa MW: 9238.53 Da PI: 7.345 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 80.9 | 2.2e-25 | 1 | 82 | 292 | 374 |
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 reivn++aceg +r+er e ++kWr+r+++aGF p p+s+++ +++ll+ + ++ y+ ee++g l +gW +++L+++SaW+ Traes_3DL_BF7D83705.1 1 REIVNILACEGPDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGGIRSLLSSYCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 82 79****************************************************66.*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 7.7E-23 | 1 | 82 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 15.185 | 1 | 63 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
REIVNILACE GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGGIRSLL SSYCDRYKFE 60 EDHGGLHFGW GEKTLIVASA WQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249646 | 1e-115 | AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564775.1 | 6e-54 | scarecrow-like protein 1 | ||||
Refseq | XP_015610828.1 | 4e-54 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 3e-31 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0D3EX17 | 9e-53 | A0A0D3EX17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YI89 | 9e-53 | A0A0D9YI89_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CB54 | 9e-53 | A0A0E0CB54_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FWL3 | 3e-53 | A0A0E0FWL3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0FWL4 | 9e-53 | A0A0E0FWL4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0JRU3 | 9e-53 | A0A0E0JRU3_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0N5V5 | 3e-53 | A0A0E0N5V5_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1HU00 | 1e-52 | I1HU00_BRADI; Uncharacterized protein | ||||
TrEMBL | I1NTZ3 | 9e-53 | I1NTZ3_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8RZQ6 | 9e-53 | Q8RZQ6_ORYSJ; Os01g0881500 protein | ||||
STRING | BRADI2G56910.1 | 2e-53 | (Brachypodium distachyon) | ||||
STRING | OGLUM01G43650.1 | 2e-53 | (Oryza glumipatula) | ||||
STRING | ORUFI01G42800.1 | 5e-54 | (Oryza rufipogon) | ||||
STRING | OS01T0881500-01 | 2e-53 | (Oryza sativa) | ||||
STRING | OPUNC01G38160.1 | 2e-53 | (Oryza punctata) | ||||
STRING | ORGLA01G0333300.1 | 2e-53 | (Oryza glaberrima) | ||||
STRING | Traes_3DL_BF7D83705.1 | 1e-55 | (Triticum aestivum) | ||||
STRING | OBART01G39420.1 | 2e-53 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 1e-33 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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