PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_BC7A7E056.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 277aa    MW: 31515.7 Da    PI: 10.4814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_BC7A7E056.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.2e-187713399
                           -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  Traes_3DL_BC7A7E056.1  7 TQELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRVGVRRA 71
                           34899**********************************************..449999*****996 PP
2Auxin_resp113.61.8e-3796177183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  Traes_3DL_BC7A7E056.1  96 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 177
                            89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0021172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308172IPR003340B3 DNA binding domain
SuperFamilySSF1019365.2E-23299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-25285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-13570No hitNo description
PfamPF023621.0E-15771IPR003340B3 DNA binding domain
PfamPF065072.2E-3496177IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTQSPPTQEL VAKDLHGMDW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE  60
SGELRVGVRR AMRQLSNVPS SVISSHSMHL GVLATAWHAI NTKSMFTVYY KPRTSPSEFI  120
IPYDQYMESV KNNYSIGMRF RMRFEGEEAP EQRFTGTIVG SENLDQLWPE SNWRSLKVRW  180
DEPSTIPRPD RVSPWKIEPA SSPPVNPLPL SRVKRPRPNV PPVSPESSVL TKEGATKIDM  240
DSAQAQQRNQ NSMVLQGQEH MTLRTNNLTG SNESDAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1031202155357Auxin response factor 1
4ldw_A1e-1031202155357Auxin response factor 1
4ldw_B1e-1031202155357Auxin response factor 1
4ldx_A1e-1031202155357Auxin response factor 1
4ldx_B1e-1031202155357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK201e-180ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A453GE500.0A0A453GE50_AEGTS; Auxin response factor
TrEMBLA0A453GE930.0A0A453GE93_AEGTS; Auxin response factor
TrEMBLA0A453GEF40.0A0A453GEF4_AEGTS; Auxin response factor
STRINGEMT097790.0(Aegilops tauschii)
STRINGMLOC_68907.10.0(Hordeum vulgare)
STRINGTraes_3DL_BC7A7E056.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-128auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]