PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_A3AC10E58.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 194aa MW: 22651.9 Da PI: 6.6883 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 186.5 | 1.8e-57 | 1 | 192 | 128 | 318 |
GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 L+q L++Rp+gpp+lRiT+++ p++g +e++ee+g+ L+++A++++vpf+++ +a+++e++++e+L+++++E l+Vn++++ ++l Traes_3DL_A3AC10E58.1 1 LIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFKYHG-IASQFEAVQVEDLHIEKDEILIVNSMFRFKTL 87 89*****************************************************.7******************************* PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +sa fd+lea++pr++eer +E +++re+ nv++ce Traes_3DL_A3AC10E58.1 88 MDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSAHFDMLEANIPRDNEERLLIESTIFSREAINVISCE 175 **************************************************************************************** PP GRAS 302 gaerrerhetlekWrer 318 g er er et+++W+ r Traes_3DL_A3AC10E58.1 176 GMERMERPETYKQWQVR 192 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.251 | 1 | 194 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.1E-55 | 1 | 192 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
LIQRLSKRPG GPPELRITAI DTPQPGFRPA ERIEEIGRYL SDYAQTFKVP FKYHGIASQF 60 EAVQVEDLHI EKDEILIVNS MFRFKTLMDE SVVAESPRNM VLNTIRKMKP HVFIHGVTNG 120 SYNAPFFVSR FREALFQFSA HFDMLEANIP RDNEERLLIE STIFSREAIN VISCEGMERM 180 ERPETYKQWQ VRNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-17 | 1 | 191 | 127 | 316 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188125.1 | 1e-136 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 8e-76 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A453FWP8 | 1e-136 | A0A453FWP8_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453FWQ1 | 1e-136 | A0A453FWQ1_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453FWQ6 | 1e-136 | A0A453FWQ6_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BFT3 | 1e-137 | M8BFT3_AEGTA; Scarecrow-like protein 14 | ||||
STRING | Traes_3DL_A3AC10E58.1 | 1e-142 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22289 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 3e-78 | GRAS family protein |
Publications ? help Back to Top | |||
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