PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_845402F4B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 135aa MW: 15865.3 Da PI: 12.3577 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.3e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l + v+++ + +W t +++ g++R++k+c++rw++yl Traes_3DL_845402F4B.1 14 RGPWSREEDAILRNFVRRFANAgNWITLPQKAGLNRCGKSCRLRWLNYL 62 89******************999*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 5 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-13 | 8 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.908 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-8 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.78E-7 | 16 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MGRSPCCDKA SVKRGPWSRE EDAILRNFVR RFANAGNWIT LPQKAGLNRC GKSCRLRWLN 60 YLPPRAPARR LHRRGGQPHI VPLRRHRKQV VGDRGQAPRP NRQRRQEPLE HQAQEEVLLA 120 DRGAINSPYR RRRRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | RRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241370 | 1e-122 | AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A2ZXD1 | 7e-45 | A2ZXD1_ORYSJ; Uncharacterized protein | ||||
STRING | Traes_3DL_845402F4B.1 | 5e-92 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-29 | myb domain protein 36 |
Publications ? help Back to Top | |||
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