PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_734F1498E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 504aa    MW: 55878.6 Da    PI: 10.1939
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_734F1498E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.5e-2527128199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+
  Traes_3DL_734F1498E.1  27 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVL 112
                            99****************************9843.43.4569********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   + +++el+++v+r+
  Traes_3DL_734F1498E.1 113 FL--RGDDGELRLGVRRA 128
                            **..3489999***9986 PP
2Auxin_resp111.49.1e-37153233182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a++++++svF+++YnPra++seF+++++k++k+l++++++GmRfk+++ +ed++err sG+++g++d+dp+rW++SkW+sL
  Traes_3DL_734F1498E.1 153 VANSLKHRSVFHICYNPRAAASEFIIPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINDVDPIRWTGSKWKSL 233
                            68999*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-4511166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-3923128IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-2325127No hitNo description
PROSITE profilePS5086313.22527129IPR003340B3 DNA binding domain
SMARTSM010194.4E-2427129IPR003340B3 DNA binding domain
PfamPF023625.0E-2327128IPR003340B3 DNA binding domain
PfamPF065071.0E-29154233IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ  60
IRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE  120
LRLGVRRAIQ LKNEALLKAF NSNSSKIHTL SAVANSLKHR SVFHICYNPR AAASEFIIPY  180
WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGMITGINDV DPIRWTGSKW KSLLVRWEDG  240
TDCNSQNRLS PWEIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD  300
KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGTGFL ANTRSCMLSG PASRFPPQSP  360
YFAYQPVGFG ESVGFPEVLQ GQEVSQTVPL FQGIVSDTCS AKGGYGLYNY MRTSSAMNGG  420
FSSAAQGYPL SLSTPPPRRQ RRLRPHPQRF HHSFGWQARA TKKLRMAASL TNLEFQSLLV  480
MALLSLGLME GRLPERVACF SGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-7624255121353Auxin response factor 1
4ldw_A2e-7624255121353Auxin response factor 1
4ldw_B2e-7624255121353Auxin response factor 1
4ldy_A1e-7624255121353Auxin response factor 1
4ldy_B1e-7624255121353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761300.0AY376130.1 Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175130.10.0auxin response factor 3-like
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLR7WA270.0R7WA27_AEGTA; Auxin response factor
STRINGTraes_3DL_734F1498E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-118ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]