PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_734F1498E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 504aa MW: 55878.6 Da PI: 10.1939 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.8 | 5.5e-25 | 27 | 128 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+ Traes_3DL_734F1498E.1 27 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVL 112 99****************************9843.43.4569********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F + +++el+++v+r+ Traes_3DL_734F1498E.1 113 FL--RGDDGELRLGVRRA 128 **..3489999***9986 PP | |||||||
2 | Auxin_resp | 111.4 | 9.1e-37 | 153 | 233 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF+++YnPra++seF+++++k++k+l++++++GmRfk+++ +ed++err sG+++g++d+dp+rW++SkW+sL Traes_3DL_734F1498E.1 153 VANSLKHRSVFHICYNPRAAASEFIIPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINDVDPIRWTGSKWKSL 233 68999*****************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.05E-45 | 11 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-39 | 23 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.14E-23 | 25 | 127 | No hit | No description |
PROSITE profile | PS50863 | 13.225 | 27 | 129 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-24 | 27 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-23 | 27 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-29 | 154 | 233 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MGGGRFEGED DMEDGDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ 60 IRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE 120 LRLGVRRAIQ LKNEALLKAF NSNSSKIHTL SAVANSLKHR SVFHICYNPR AAASEFIIPY 180 WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGMITGINDV DPIRWTGSKW KSLLVRWEDG 240 TDCNSQNRLS PWEIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNVDVPTLYG NGRPDSVGAD 300 KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGTGFL ANTRSCMLSG PASRFPPQSP 360 YFAYQPVGFG ESVGFPEVLQ GQEVSQTVPL FQGIVSDTCS AKGGYGLYNY MRTSSAMNGG 420 FSSAAQGYPL SLSTPPPRRQ RRLRPHPQRF HHSFGWQARA TKKLRMAASL TNLEFQSLLV 480 MALLSLGLME GRLPERVACF SGFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-76 | 24 | 255 | 121 | 353 | Auxin response factor 1 |
4ldw_A | 2e-76 | 24 | 255 | 121 | 353 | Auxin response factor 1 |
4ldw_B | 2e-76 | 24 | 255 | 121 | 353 | Auxin response factor 1 |
4ldy_A | 1e-76 | 24 | 255 | 121 | 353 | Auxin response factor 1 |
4ldy_B | 1e-76 | 24 | 255 | 121 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY376130 | 0.0 | AY376130.1 Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175130.1 | 0.0 | auxin response factor 3-like | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | R7WA27 | 0.0 | R7WA27_AEGTA; Auxin response factor | ||||
STRING | Traes_3DL_734F1498E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-118 | ARF family protein |
Publications ? help Back to Top | |||
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