PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_68BC65ED4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 26968 Da PI: 8.8343 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 94 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrw 44 +W+ E ++l++++kq + +W+ Ia++ gR++ +c srw Traes_3DL_68BC65ED4.1 94 SWSDTEKDRLAKGIKQQYQEmlikdsmkngsssgdfsavdmayaltntggnfeatheilrsvlplvNWDYIAAMYLPGRSGAECESRW 181 699999999999999999889999999999999999999999999999999*********************99888*********** PP HHH CS Myb_DNA-binding 45 qky 47 ++y Traes_3DL_68BC65ED4.1 182 LNY 184 *98 PP | |||||||
2 | Myb_DNA-binding | 23.4 | 1.4e-07 | 192 | 235 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q Traes_3DL_68BC65ED4.1 192 NAWTACEEKRLILTVQERGMHNWINIAVALGTQRTPFQCFARYQ 235 68*****************************99******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.295 | 87 | 185 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 94 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 157 | 192 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-16 | 166 | 235 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.134 | 186 | 235 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-6 | 192 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-9 | 193 | 234 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MINIEAKIEV NKDLRDRVKC LMDYQLSCRR SFSNFLCQKV DPRVRLISSE KQSAQSAKNK 60 CKMSPLLLGP AENPHIEKYK VVLKQFPISL QKHSWSDTEK DRLAKGIKQQ YQEMLIKDSM 120 KNGSSSGDFS AVDMAYALTN TGGNFEATHE ILRSVLPLVN WDYIAAMYLP GRSGAECESR 180 WLNYDDPLIN HNAWTACEEK RLILTVQERG MHNWINIAVA LGTQRTPFQC FARYQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 1e-152 | uncharacterized protein LOC109736068 | ||||
TrEMBL | A0A453GRT4 | 1e-177 | A0A453GRT4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_68BC65ED4.1 | 1e-178 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 3e-65 | myb domain protein 4r1 |
Publications ? help Back to Top | |||
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