PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_5F3D20D9F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 76aa    MW: 8776.09 Da    PI: 4.8675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_5F3D20D9F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0002937553755
                           -STCHHHHHHHHHHHHHHH CS
                    HLH 37 KlsKaeiLekAveYIksLq 55
                             + +++L  Av+YIk Lq
  Traes_3DL_5F3D20D9F.1 37 QTNTSDMLDIAVDYIKVLQ 55
                           57899***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-73670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-63670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MTRTQLLQIS HYIRAPVLWE KSCSTDMLLS FFLNMQQTNT SDMLDIAVDY IKVLQDQIEK  60
LKQDQGNCSC SADQKC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690831e-60AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.19e-21transcription factor bHLH128-like
TrEMBLA0A287M6D93e-27A0A287M6D9_HORVV; Uncharacterized protein
STRINGTraes_3DL_5F3D20D9F.12e-49(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-10bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]