PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_5C378695E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 178aa    MW: 20366.2 Da    PI: 10.5609
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_5C378695E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-199733399
                           -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++ l+++v+r+
  Traes_3DL_5C378695E.1  9 SQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGVLRLGVRRA 73
                           569************************************************..44899999999986 PP

2Auxin_resp106.82.4e-3598178182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a+a++ ks+F+++YnPr ++seF+v+++k++++++++ svGmRfkm++e+ed+serr +Gt++g +++dp + ++SkW++L
  Traes_3DL_5C378695E.1  98 VAQAVAVKSIFHIYYNPRLCESEFIVPYWKFMRSFSQPSSVGMRFKMKYENEDASERRSTGTITGSRESDP-KSHGSKWKCL 178
                            68999******************************************************************.*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.844174IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-22284IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-14272No hitNo description
Gene3DG3DSA:2.40.330.105.2E-24476IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01574IPR003340B3 DNA binding domain
PfamPF023622.7E-16873IPR003340B3 DNA binding domain
PfamPF065074.2E-2998178IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
QDYNLQRPSQ ELVAKDLHGT EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL VSGDAVLFLR  60
GEDGVLRLGV RRAAQLKNVS PVPALFNQDS SLSSLGNVAQ AVAVKSIFHI YYNPRLCESE  120
FIVPYWKFMR SFSQPSSVGM RFKMKYENED ASERRSTGTI TGSRESDPKS HGSKWKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-552178154331Auxin response factor 1
4ldy_B2e-552178154331Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761290.0AY376129.1 Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160561.11e-123auxin response factor 2-like isoform X1
RefseqXP_020160562.11e-123auxin response factor 2-like isoform X2
SwissprotQ0JKI91e-104ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A453F7I01e-126A0A453F7I0_AEGTS; Auxin response factor
STRINGTraes_3DL_5C378695E.11e-131(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.13e-73ARF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]