PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_4544FA87D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 61aa MW: 6628.58 Da PI: 5.7337

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_4544FA87D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.2e-07	1	34	16	54
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +N+++ Lr+++Pk + K++ a+iL A++Y+k+L Traes_3DL_4544FA87D.1 1 LNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 34 69**********66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-11	1	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-4	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-11	1	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.297	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.18E-7	1	39	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
LNDRLYMLRS VVPKISKMDR ASILGDAIDY LKELLQRISD LHSELESAPS SAALGGPSTA 60 N

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269\|PubMed:18641265, ECO:0000269\|PubMed:28507175}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU562183	1e-97	EU562183.1 Triticum aestivum cultivar Norstar ICE41 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184163.1	1e-33	transcription factor ICE1-like
Swissprot	Q9LPW3	4e-25	SCRM2_ARATH; Transcription factor SCREAM2
TrEMBL	A0A287MET2	3e-34	A0A287MET2_HORVV; Uncharacterized protein
TrEMBL	A0A287MET9	3e-33	A0A287MET9_HORVV; Uncharacterized protein
TrEMBL	A0A446P1J9	2e-33	A0A446P1J9_TRITD; Uncharacterized protein
TrEMBL	Q2VGC1	6e-34	Q2VGC1_HORVV; Inducer of CBF expression 2 (Fragment)
TrEMBL	Q2VGC2	3e-33	Q2VGC2_HORVV; Inducer of CBF expression 2 (Fragment)
TrEMBL	Q2VJ11	3e-33	Q2VJ11_HORVV; Inducer of CBF expression 2 (Fragment)
STRING	MLOC_46407.1	4e-34	(Hordeum vulgare)
STRING	Traes_3B_541B06BCF.1	2e-33	(Triticum aestivum)
STRING	Traes_3DL_4544FA87D.1	6e-36	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1646	37	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.4	2e-23	bHLH family protein

Publications ? help Back to Top
Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity. Dokl. Biol. Sci., 2009. [PMID:19760875] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Emmerstorfer A, et al. Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris. Biotechnol J, 2015. 10(4): p. 623-35 [PMID:25641738] Lee HG,Seo PJ The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis. Plant J., 2015. 82(6): p. 962-77 [PMID:25912720] Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31 [PMID:27382177] Fu ZW,Wang YL,Lu YT,Yuan TT Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis. Plant Sci., 2016. 252: p. 282-289 [PMID:27717464] de Marcos A, et al. A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development. Plant Physiol., 2017. 174(2): p. 823-842 [PMID:28507175]