PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_3ECFD7555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 65aa MW: 7719.79 Da PI: 4.4945 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.1 | 6.6e-09 | 25 | 64 | 1 | 40 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 +f n+YA e GFsvrk + + + n +i+ r++vCs+eg Traes_3DL_3ECFD7555.1 25 EFCNKYALEKGFSVRKGYVEWDEANVKIILRKLVCSREGC 64 5889**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-6 | 25 | 64 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
VSDECMAEYD DIVIRMFDRE EEGFEFCNKY ALEKGFSVRK GYVEWDEANV KIILRKLVCS 60 REGCR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156981.1 | 5e-32 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020183684.1 | 5e-32 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453GV99 | 2e-37 | A0A453GV99_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_3ECFD7555.1 | 1e-39 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Publications ? help Back to Top | |||
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