PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_2E5A96ACF.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 414aa    MW: 46067.5 Da    PI: 8.9749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_2E5A96ACF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-105379127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C +++rtG C++G +C+F+H++
  Traes_3DL_2E5A96ACF.1 53 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 79
                           5789*********************97 PP

2zf-CCCH38.12.5e-12100124327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C+++++tGtCk+G++CkF+H++
  Traes_3DL_2E5A96ACF.1 100 QPECQYYLKTGTCKFGPTCKFHHPR 124
                            799********************96 PP

3zf-CCCH38.32.3e-12146170327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C ++++tG+CkyG++CkF+H++
  Traes_3DL_2E5A96ACF.1 146 ERECAYYLKTGQCKYGNTCKFNHPE 170
                            799********************96 PP

4zf-CCCH33.38.1e-11307332227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C ++ +tG Ck+G+ CkF+H++
  Traes_3DL_2E5A96ACF.1 307 DHPECIYYIKTGDCKFGAVCKFHHPR 332
                            689*********************96 PP

5zf-CCCH41.71.9e-13352378127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++elC+f++r+G+Ck+G +CkF H++
  Traes_3DL_2E5A96ACF.1 352 PGEELCKFYSRYGICKFGVNCKFDHPM 378
                            689**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.5E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7095280IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-85479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-55781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-45879IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.69497125IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-697124IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5103125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6143169IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568143171IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-10146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5149169IPR000571Zinc finger, CCCH-type
SMARTSM003560.015305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361305333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5307332IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7307332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971351379IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6353378IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10353378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5355376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MWILCWRLII NLQTCLISIL ISFVCARNAE GMWQQMAMSS GATMQSGPYP VRPGEPDCTY  60
YLRTGLCRFG MSCRFNHPQD RNTAIASARM KGEYPERVGQ PECQYYLKTG TCKFGPTCKF  120
HHPREKAGIA GMVQLNTLGY PLRPNERECA YYLKTGQCKY GNTCKFNHPE IFNAVASSRG  180
SPIYPPVHNS GSTGPHSYTG TMASWTYPRG SFIPSPRWQS PSNYTPMIVP QGLVQVPNWN  240
SYPGQMVPVS SPESRLQSPG AQQYYGTSRQ GEASAGNQGM QSPYRSSSFP APQYALQREN  300
VFPERPDHPE CIYYIKTGDC KFGAVCKFHH PRVRSQPPPD CILSPMGLPL RPGEELCKFY  360
SRYGICKFGV NCKFDHPMAA PMGVYAYGYS ASASPNAPMG RRLLESPSGS AYAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A453GAT60.0A0A453GAT6_AEGTS; Uncharacterized protein
STRINGTraes_3DL_2E5A96ACF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]