PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_2E5A96ACF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 414aa MW: 46067.5 Da PI: 8.9749 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.2e-10 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ Traes_3DL_2E5A96ACF.1 53 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 79 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.5e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Traes_3DL_2E5A96ACF.1 100 QPECQYYLKTGTCKFGPTCKFHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 146 | 170 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ Traes_3DL_2E5A96ACF.1 146 ERECAYYLKTGQCKYGNTCKFNHPE 170 799********************96 PP | |||||||
4 | zf-CCCH | 33.3 | 8.1e-11 | 307 | 332 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ Traes_3DL_2E5A96ACF.1 307 DHPECIYYIKTGDCKFGAVCKFHHPR 332 689*********************96 PP | |||||||
5 | zf-CCCH | 41.7 | 1.9e-13 | 352 | 378 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ Traes_3DL_2E5A96ACF.1 352 PGEELCKFYSRYGICKFGVNCKFDHPM 378 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.5E-5 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 58 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-10 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 143 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-10 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-5 | 149 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.361 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-5 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-7 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 355 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MWILCWRLII NLQTCLISIL ISFVCARNAE GMWQQMAMSS GATMQSGPYP VRPGEPDCTY 60 YLRTGLCRFG MSCRFNHPQD RNTAIASARM KGEYPERVGQ PECQYYLKTG TCKFGPTCKF 120 HHPREKAGIA GMVQLNTLGY PLRPNERECA YYLKTGQCKY GNTCKFNHPE IFNAVASSRG 180 SPIYPPVHNS GSTGPHSYTG TMASWTYPRG SFIPSPRWQS PSNYTPMIVP QGLVQVPNWN 240 SYPGQMVPVS SPESRLQSPG AQQYYGTSRQ GEASAGNQGM QSPYRSSSFP APQYALQREN 300 VFPERPDHPE CIYYIKTGDC KFGAVCKFHH PRVRSQPPPD CILSPMGLPL RPGEELCKFY 360 SRYGICKFGV NCKFDHPMAA PMGVYAYGYS ASASPNAPMG RRLLESPSGS AYAS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367946 | 0.0 | AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151757.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A453GAT6 | 0.0 | A0A453GAT6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_3DL_2E5A96ACF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-144 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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