PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_2795DC25B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 98aa    MW: 11515.2 Da    PI: 10.1054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_2795DC25B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-111411055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r+RR+++N++f++Lr+llP++      K +K ++L+kA  Y+k L+
  Traes_3DL_2795DC25B.1  1 RKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLTKAAWYLKTLE 41
                           9*******************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.929140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-16158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-8146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-7145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
RKRREKLNDS FHTLRSLLPP CSKKDKTTVL TKAAWYLKTL EAQVSELEEK NNKLEKHIPT  60
YDREEDVPHQ QRRQRAKVQI TKAASDEVVN LTVMVMVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686841e-104AK368684.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078B02.
GenBankHG6703061e-104HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.13e-64putative transcription factor bHLH041
TrEMBLA0A453EYC42e-63A0A453EYC4_AEGTS; Uncharacterized protein
STRINGTraes_3DL_2795DC25B.16e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-12bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]