PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_1FC3735D9.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 663aa    MW: 74673.4 Da    PI: 6.9331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_1FC3735D9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-187713399
                           -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  Traes_3DL_1FC3735D9.1  7 TQELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRVGVRRA 71
                           34899**********************************************..449999*****996 PP

2Auxin_resp107.31.7e-3596177183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg  +ld+  Wp+S WrsLk
  Traes_3DL_1FC3735D9.1  96 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 177
                            89******************************************************************999.9********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.7E-4172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449172IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-24285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-21299IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-13570No hitNo description
PfamPF023621.4E-15771IPR003340B3 DNA binding domain
PfamPF065073.9E-3296177IPR010525Auxin response factor
PfamPF023091.3E-5514569IPR033389AUX/IAA domain
SuperFamilySSF542773.09E-13527610No hitNo description
PROSITE profilePS5174525.447533626IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2408.6E-4551605No hitNo description
PfamPF023091.1E-8573618IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MTQSPPTQEL VAKDLHGMEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE  60
SGELRVGVRR AMRQLSNIAS SVISSHSMHL GVLATAWHAI NTKTMFTVYY KPRTSRSEFI  120
IPYDKYMESV KNIYSIGTRF KMRFEGEEAP EQRFTGTIVG SDNLDQLWPE SSWRSLKVRW  180
DESSTIPRPD RVSPWEIEPA SSPPVNPLPI SRPKRSRPNV PPASPESSVR TKEGATKADM  240
DCAQAQRNQN NTALPGQEQR SNKLTDINDF DASVQKPMMW SPPPPPNIGK NNPLTFQQRP  300
SVHNSFQLGR RETDFKDASS GAQPFGDSLG FFMQTTFDEA PNRLSSFKNQ FQDHSYARQY  360
ADPYLFMHQQ PSLTVESSRK MHTENNEMHF WNGPSTAYSN SRDQAQDFRF TEHPSNWLSP  420
QFSRAEQPRV IRPHASIAPI ELEKTTEGSD FKIFGFKVDT ASAGFNHLNS PMAGTHEPVL  480
QTQPSVSLDH LQTDCSPEVS LSIAGTTENE KNMQQCPQSS KDVQSKSHGA STRSCTKVHK  540
QGVALGRSVD LSKFVDYDEL TAELDKMFEF DGELLSSNKN WQIVYTDNEG DMMLVGDDPW  600
EEFCSIVRKI CIYTKEEVQK MNSKPSGPKK EEGSVDGDGA TEKAHLPASS DLNSSQLGCV  660
KAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-971202155357Auxin response factor 1
4ldw_A2e-971202155357Auxin response factor 1
4ldw_B2e-971202155357Auxin response factor 1
4ldx_A2e-971202155357Auxin response factor 1
4ldx_B2e-971202155357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727980.0AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197968.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A3B6H4E20.0A0A3B6H4E2_WHEAT; Auxin response factor
STRINGTraes_3DL_1FC3735D9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]