PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_1FC3735D9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 663aa MW: 74673.4 Da PI: 6.9331 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.1e-18 | 7 | 71 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v+v+r+ Traes_3DL_1FC3735D9.1 7 TQELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRVGVRRA 71 34899**********************************************..449999*****996 PP | |||||||
2 | Auxin_resp | 107.3 | 1.7e-35 | 96 | 177 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg +ld+ Wp+S WrsLk Traes_3DL_1FC3735D9.1 96 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 177 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.7E-4 | 1 | 72 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.449 | 1 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-24 | 2 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-21 | 2 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-13 | 5 | 70 | No hit | No description |
Pfam | PF02362 | 1.4E-15 | 7 | 71 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-32 | 96 | 177 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-5 | 514 | 569 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.09E-13 | 527 | 610 | No hit | No description |
PROSITE profile | PS51745 | 25.447 | 533 | 626 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.6E-4 | 551 | 605 | No hit | No description |
Pfam | PF02309 | 1.1E-8 | 573 | 618 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MTQSPPTQEL VAKDLHGMEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE 60 SGELRVGVRR AMRQLSNIAS SVISSHSMHL GVLATAWHAI NTKTMFTVYY KPRTSRSEFI 120 IPYDKYMESV KNIYSIGTRF KMRFEGEEAP EQRFTGTIVG SDNLDQLWPE SSWRSLKVRW 180 DESSTIPRPD RVSPWEIEPA SSPPVNPLPI SRPKRSRPNV PPASPESSVR TKEGATKADM 240 DCAQAQRNQN NTALPGQEQR SNKLTDINDF DASVQKPMMW SPPPPPNIGK NNPLTFQQRP 300 SVHNSFQLGR RETDFKDASS GAQPFGDSLG FFMQTTFDEA PNRLSSFKNQ FQDHSYARQY 360 ADPYLFMHQQ PSLTVESSRK MHTENNEMHF WNGPSTAYSN SRDQAQDFRF TEHPSNWLSP 420 QFSRAEQPRV IRPHASIAPI ELEKTTEGSD FKIFGFKVDT ASAGFNHLNS PMAGTHEPVL 480 QTQPSVSLDH LQTDCSPEVS LSIAGTTENE KNMQQCPQSS KDVQSKSHGA STRSCTKVHK 540 QGVALGRSVD LSKFVDYDEL TAELDKMFEF DGELLSSNKN WQIVYTDNEG DMMLVGDDPW 600 EEFCSIVRKI CIYTKEEVQK MNSKPSGPKK EEGSVDGDGA TEKAHLPASS DLNSSQLGCV 660 KAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-97 | 1 | 202 | 155 | 357 | Auxin response factor 1 |
4ldw_A | 2e-97 | 1 | 202 | 155 | 357 | Auxin response factor 1 |
4ldw_B | 2e-97 | 1 | 202 | 155 | 357 | Auxin response factor 1 |
4ldx_A | 2e-97 | 1 | 202 | 155 | 357 | Auxin response factor 1 |
4ldx_B | 2e-97 | 1 | 202 | 155 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372798 | 0.0 | AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197968.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | A0A3B6H4E2 | 0.0 | A0A3B6H4E2_WHEAT; Auxin response factor | ||||
STRING | Traes_3DL_1FC3735D9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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