PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DL_13B382BD2.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 302aa MW: 33145.1 Da PI: 4.9099

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DL_13B382BD2.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	282.9	9.4e-87	31	289	2	262
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++lL++cA+a+++ + +aqa+++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ + + +l+a+++++e++P Traes_3DL_13B382BD2.1 31 KQLLFDCATALAEYNVDEAQAIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGTGIYKALTCKDPP---TLYQLSAMQILFEICP 115 589***************************************************************9...89999******* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 +++f++++aN aIlea +geer+HiiDfdi+qG Q+++L+q + + +++p +lRiTgv+++e++ l+ +g+rL+k+Ae +g++ Traes_3DL_13B382BD2.1 116 CYRFGFMAANYAILEACKGEERMHIIDFDINQGSQYITLMQFMKDDANKPRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAEDCGIS 203 ********************************************************9988778889************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 fef++ v ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +r++ +l+ Traes_3DL_13B382BD2.1 204 FEFRA-VGADIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRLVISLS 289 *.7999**********************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.837	4	302	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-84	31	289	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKDVLLATSP KESESSISCA GSNSGEARTP KQLLFDCATA LAEYNVDEAQ AIITDLRQMV 60 SIQGDPSHRI AAYLVEGLAA RIVASGTGIY KALTCKDPPT LYQLSAMQIL FEICPCYRFG 120 FMAANYAILE ACKGEERMHI IDFDINQGSQ YITLMQFMKD DANKPRHLRI TGVDDHETVQ 180 RTVGGLKVIG QRLEKLAEDC GISFEFRAVG ADIGDVTPAM LDCRPGEALV VNFAFQLHHL 240 PDESVSIMNE RDQLLRMVKG LQPKLVTLVE QDANTNTAPF QTRLVISLSN SIAAVILVLY 300 GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-35	37	285	26	264	Protein SCARECROW
5b3h_A	3e-35	37	285	25	263	Protein SCARECROW
5b3h_D	3e-35	37	285	25	263	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172158.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	1e-121	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A287M9D6	0.0	A0A287M9D6_HORVV; Uncharacterized protein
TrEMBL	A0A3B6H328	0.0	A0A3B6H328_WHEAT; Uncharacterized protein
TrEMBL	A0A453G7A0	0.0	A0A453G7A0_AEGTS; Uncharacterized protein
TrEMBL	M8C1W0	0.0	M8C1W0_AEGTA; Uncharacterized protein
STRING	Traes_3DL_13B382BD2.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5175	38	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-124	SCARECROW-like 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]