PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_FACAC1A32.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 216aa    MW: 23226.4 Da    PI: 10.1089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_FACAC1A32.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.5e-072387555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55
                           + +E++RR +++    +L +l+P +s              + ++   +  + L  A  YIk+L+
  Traes_3B_FACAC1A32.1 23 RKDVEKNRRLHMKGLCLKLSSLVPASSssdhhlrhysssppSSNKDAATQLDQLDSAAAYIKQLR 87
                          5789*********************666***********96666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.1661886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-102097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-82199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-42386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKSRRQSGRG GAMVADGGCK MERKDVEKNR RLHMKGLCLK LSSLVPASSS SDHHLRHYSS  60
SPPSSNKDAA TQLDQLDSAA AYIKQLRGRI DDLKRRKQAA LSGGTAGCSS SVSAGDYKAQ  120
TTSLPVIEVR HHDGTLDVAL VSEVGRPFRL HEVIAVLEQE GAEVVSASFS VVGDKIFYTL  180
HSQAFCPRIG LDARRVDQRL RGLAAAATIS SSVLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-143HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183666.11e-126uncharacterized protein LOC109769325
TrEMBLA0A3B6FDM51e-154A0A3B6FDM5_WHEAT; Uncharacterized protein
STRINGTraes_3B_FACAC1A32.11e-155(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-20bHLH family protein