PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_D9F27151E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 558aa    MW: 61882 Da    PI: 5.4921
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_D9F27151E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78e-26165218155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Traes_3B_D9F27151E.1 165 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 218
                           68*******************.9*******************************8 PP
2Response_reg81.33.2e-27131211109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + 
  Traes_3B_D9F27151E.1  13 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEILRERKnrFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVM 99 
                           89*********************.***************877778**********************6654.8**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + ++ Ga d+l Kp+ ++el++
  Traes_3B_D9F27151E.1 100 KGVQHGACDYLLKPVRMKELRN 121
                           *******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.7E-4410142No hitNo description
SuperFamilySSF521722.85E-3510136IPR011006CheY-like superfamily
SMARTSM004481.5E-3111123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.76212127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2413122IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.27E-3014126No hitNo description
SuperFamilySSF466899.86E-18162221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28163222IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-23165218IPR006447Myb domain, plants
PfamPF002498.6E-8167217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MADASAFPYG LRVLVVDDDP TWLKILEKML RKCSYEVTTC GLARVALEIL RERKNRFDIV  60
ISDVNMPDMD GFKLLEHIGL EMDLPVIMMS IDGETSRVMK GVQHGACDYL LKPVRMKELR  120
NIWQHVYRKK MHEVKEIEVD SDATRKRKDV DHGDQDSSDG ATAKKARVVW SVDLHQKFVN  180
AVNQIGFDKV GPKKILDLMN VPGLTRENVA SHLQKYRLYL GRLQKQNEER LLGSARQDFS  240
TKGPSSENLN LRSSFQEQPS NTSSGYPHAS QKIQGQSSVS DSQLEETKRM VPLPAPDRSM  300
NSVSSAAEPQ NVAGVSPIGG VLSFKGLPVN QDRKPSETMI LECQAWTGGV PAKQFMQYPK  360
HNHARCDLLG DYACLPKPDL EHPTAPGHLF TPPPLISMSC STEMDARNFS DVKPALVDCI  420
KSFSPALTCT ADSVSVQISD SVVTSTDAAD RKFSSVEGLP TTKDCYFGQT SNQGSWLRSQ  480
EEPSIICGAD FASLPEDLPG YPLQGGVSFE NVGLSSIDLF HYNDAMILSG LQSNWYDDQD  540
HFSSETTDYP LMDGCLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17164223463ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127147RKKMHEVKEIEVDSDATRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147288.10.0two-component response regulator ORR26-like
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A446Q7J00.0A0A446Q7J0_TRITD; Two-component response regulator
STRINGTraes_3B_D9F27151E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-111response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]