PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_A25F058E5.1
Common NameTRAES_3BF090100150CFD_c1, TRAES_3BF108400020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 556aa    MW: 63368.2 Da    PI: 9.1446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_A25F058E5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.71.2e-1141825512374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lL++cA+ vs +d + a+ lL++++++as +gd  qRla++f+++L+arla+++s++yk  + s+ +    ++ l+a++l+  ++P+
  Traes_3B_A25F058E5.1 182 ETLLIHCAQSVSIDDRRSATDLLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKLHTISRFA---CADILKAYQLYLAACPF 267
                           789**********************************************************99999999...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            k+sh  aNq+I++ave++++vHi+Df++ +G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++ee+g+ L+++A++++vpf+
  Traes_3B_A25F058E5.1 268 KKISHYFANQTIMNAVEKAKKVHIVDFGVYYGFQWPCLIQRLSKRPGGPPELRITAIDTPQPGfrPAERIEEIGRYLSDYAQTFKVPFK 356
                           ***************************************************************************************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           ++  +a+++e++++e+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+v+++   + ++n++ F+ rf eal  +sa
  Traes_3B_A25F058E5.1 357 YHG-IASQFEAVRVEDLHIEKDEILIVNSMFRFKTLMDESVVAESPRNMVLNTIRKMKPHVFIHGVTNGSYNAPFFVSRFREALFQFSA 444
                           ***.7************************************************************************************ PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                            fd+lea++pr++eer  +E  +++re+ nv++ceg er er et+++W+ r ++a Fk++pl+++++k a+  ++ ++++ + ++e++
  Traes_3B_A25F058E5.1 445 HFDMLEANIPRDNEERLLIESTIFSREAINVISCEGMERMERPETYKQWQVRNQRARFKQLPLDQEIMKRAREKVKCYHKN-FIIDEDN 532
                           ****************************************************************************99966.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           g+l++gWk+r L+++S W+
  Traes_3B_A25F058E5.1 533 GWLLQGWKGRILYALSTWK 551
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.789155532IPR005202Transcription factor GRAS
PfamPF035144.1E-112182551IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAAALHFQRA SSRGSARRXD AGLSDFVLQS QQAAQFSRGF EEGSRFLPQE SKLVIDVDSL  60
PSVWVKEDKK VVEVKREKAD AEVAIHRGKK HFYGDDLDAD EVRCCKHSAP VVDADHLVRE  120
MMDKVLLCNG ETCSRGVKEL REALQHDVAA HSGGAHGKGS GHGKGRGKKQ VKQPKKEVVD  180
LETLLIHCAQ SVSIDDRRSA TDLLKQIRQH ASANGDGDQR LAHCFANGLE ARLAGNGSQI  240
YKLHTISRFA CADILKAYQL YLAACPFKKI SHYFANQTIM NAVEKAKKVH IVDFGVYYGF  300
QWPCLIQRLS KRPGGPPELR ITAIDTPQPG FRPAERIEEI GRYLSDYAQT FKVPFKYHGI  360
ASQFEAVRVE DLHIEKDEIL IVNSMFRFKT LMDESVVAES PRNMVLNTIR KMKPHVFIHG  420
VTNGSYNAPF FVSRFREALF QFSAHFDMLE ANIPRDNEER LLIESTIFSR EAINVISCEG  480
MERMERPETY KQWQVRNQRA RFKQLPLDQE IMKRAREKVK CYHKNFIIDE DNGWLLQGWK  540
GRILYALSTW KANPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-481855518375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188125.10.0scarecrow-like protein 9
SwissprotQ9XE581e-172SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A077RW700.0A0A077RW70_WHEAT; Uncharacterized protein
STRINGTraes_3B_A25F058E5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-164GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]