PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_934488D20.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 405aa    MW: 44077.3 Da    PI: 6.4568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_934488D20.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-19108153147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+WT+eEdell ++v ++G + W+tI+++++ gR +kqc++rw ++
  Traes_3B_934488D20.1 108 RGPWTEEEDELLRRLVDEHGEHKWATISEHLP-GRIGKQCRERWTNH 153
                           89******************************.***********997 PP
2Myb_DNA-binding51.32.7e-16163202445
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           WT+ +d  l+da+k +G++ W++Iar+++ gR+++ +k++w+
  Traes_3B_934488D20.1 163 WTEADDIVLIDAHKIHGNR-WSSIARCLP-GRSENAVKNHWN 202
                           *******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.042105158IPR017930Myb domain
SMARTSM007171.3E-18107156IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-30107201IPR009057Homeodomain-like
PfamPF002492.1E-18108153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23109158IPR009057Homeodomain-like
CDDcd001674.53E-17110154No hitNo description
SMARTSM007177.8E-13159207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-18159205IPR009057Homeodomain-like
PROSITE profilePS5129416.265159209IPR017930Myb domain
PfamPF002494.1E-13163202IPR001005SANT/Myb domain
CDDcd001671.24E-12163202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASLGDMLLN QELAAVAAMS ADAHGRFGRY TLSPAHGFSH FQQAGSAPTG FPDTGLLISG  60
FGMPPSTFIM PEGTHAAAGY GAEVVPVEIP VVRRQRPAAR NDGATPFRGP WTEEEDELLR  120
RLVDEHGEHK WATISEHLPG RIGKQCRERW TNHVRPGIKE HIWTEADDIV LIDAHKIHGN  180
RWSSIARCLP GRSENAVKNH WNATRRSLKS KRRFKKKTSQ QAAPGQFTLL EEYIRDKMMA  240
DENLAPSSPL AGVAYDGQVV PGAAAMLAVS TPPGMGQYLH PANAAGSSSQ AGMMNLSVPL  300
PDLNAYSGEM LERYYYPTYS NNLLPYGPEP AFPQMFSAQG RMHAACTNLN LFPLPQHPGG  360
GYYGSETGRS SAGGSSDQDE DVAQMASREF QTSEDEATLD LTGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-391082047103B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163979.10.0uncharacterized protein LOC109749424
TrEMBLA0A446NVJ60.0A0A446NVJ6_TRITD; Uncharacterized protein
STRINGTraes_3B_934488D20.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-34myb domain protein 118
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]