PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_90BE2090B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 348aa    MW: 37772.9 Da    PI: 10.1933
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_90BE2090B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1253101155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s++kGV   + +grW A+I++      r +r++lg+f  ++ Aa+a++ a+++++g
  Traes_3B_90BE2090B.1  53 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEDSAARAYDVAALRYRG 101
                           689***9788.8*********......44**********99*************98 PP
2B394.95.6e-30167262187
                           EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                           f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++
  Traes_3B_90BE2090B.1 167 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSI 255
                           89*************************9987776644455999********************************************** PP

                           EEEE-SS CS
                    B3  81 vFkldgr 87 
                           vF+ +  
  Traes_3B_90BE2090B.1 256 VFSCSAY 262
                           **96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-2253109No hitNo description
PfamPF008471.4E-753101IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1653110IPR016177DNA-binding domain
PROSITE profilePS5103220.98254109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2054109IPR001471AP2/ERF domain
SMARTSM003801.2E-2254115IPR001471AP2/ERF domain
PRINTSPR003671.7E-65566IPR001471AP2/ERF domain
PRINTSPR003671.7E-691111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-38162281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-30164273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.88E-29165257No hitNo description
PfamPF023629.4E-28167262IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578167276IPR003340B3 DNA binding domain
SMARTSM010192.7E-22167275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
APRGNPPPST LPGSCPQPRR SQASAXXXAP SLPVAIADES VTSRSAPAQS ASSRFKGVVP  60
QPNGRWGAQI YERHARVWLG TFPDEDSAAR AYDVAALRYR GREAATNFPC AAAEAELAFL  120
AAHSKAEIVD MLRKHTYADE LRQGLRRGRG MGARAQPTPS WAREPLFEKA VTPSDVGKLN  180
RLVVPKQHAE KHFPLKRTPE TTTTTGKGVL LNFEDGEGKV WRFRYSYWNS SQSYVLTKGW  240
SRFVREKGLG AGDSIVFSCS AYGQEKQFFI DCKKNKTMAS CPADGGAATA SPPVAEAANG  300
EQVRVVRLFG VDIAGEKRGR AAPAEQELFK RQCVAHSQHS PALGAIVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4816428511130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201133.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
RefseqXP_020201484.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-145Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A3B6FIV40.0A0A3B6FIV4_WHEAT; Uncharacterized protein
STRINGTraes_3B_90BE2090B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-91related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]