PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_2DFE8318A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 282aa MW: 32496.7 Da PI: 9.8964 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 195 | 277 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l k++++ h gkk + + l+l+ ++r+W+ +l r+ s+r+ + kGW Fv+ n+L++gD+++Fkl++++ ++ v ++r+ Traes_3B_2DFE8318A.1 195 SRYLEKQYFTGHRGKK-NVISLVLQReGKSRTWDTEL--RRASDRMRICKGWVAFVRGNRLRVGDICLFKLMESELLKMIVYIIRR 277 4567778888885554.4466888774566*******..*********************************9999******9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 6.626 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-7 | 2 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-6 | 2 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.51E-7 | 4 | 75 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-16 | 163 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-16 | 165 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-15 | 168 | 276 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 181 | 278 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-4 | 185 | 278 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 196 | 277 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
IIRKEYALKY FPCEATNIIL QLPRKNKEWK CRFNPGRRNL YLGYFVHDNC VQEGDICLFQ 60 PIAKVKEGRF TIIVHLLHKE SVRRSPGGTA GMTHMATDRR TSANTSLTAR VKEEPATDDI 120 SSLGPEEDVD NSEGASETLF VLPERASITP AQEQKVREKV ETIESTLPVY VAILNKCNVS 180 RKYGIMITMG KQYASRYLEK QYFTGHRGKK NVISLVLQRE GKSRTWDTEL RRASDRMRIC 240 KGWVAFVRGN RLRVGDICLF KLMESELLKM IVYIIRREKC LD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198702.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A3B6FX72 | 0.0 | A0A3B6FX72_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_2DFE8318A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-07 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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