PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_2B7B665A9.1 | ||||||||
Common Name | TRAES_3BF072000010CFD_c1, TRAES_3BF072100010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 470aa MW: 49924.8 Da PI: 7.5969 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 55 | 80 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ Traes_3B_2B7B665A9.1 55 DQADCIYYLRTGACGFGDRCRYNHPR 80 6789********************96 PP | |||||||
2 | zf-CCCH | 39.7 | 8e-13 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ Traes_3B_2B7B665A9.1 105 QPVCEYYMKTGTCKFGSNCKYHHPK 129 789********************96 PP | |||||||
3 | zf-CCCH | 39.9 | 7.2e-13 | 149 | 174 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ Traes_3B_2B7B665A9.1 149 GEKECSYYMKTGQCKFGSTCKFHHPE 174 7899********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Traes_3B_2B7B665A9.1 302 PGQPECQYYMRTGDCKFGATCKYHHPR 328 5789*********************96 PP | |||||||
5 | zf-CCCH | 34 | 4.9e-11 | 351 | 374 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ Traes_3B_2B7B665A9.1 351 QPCSYYAQNGYCRYGVACKYDHPM 374 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.605 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 59 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.042 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-7 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-6 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 153 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.319 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-10 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 305 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 307 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 351 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 351 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MEPHPAAAAG GGGGEGEAGR GADPDTGLEG SMWRMGLAGD GGGEGDGARL PERPDQADCI 60 YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVALDYP ERLGQPVCEY YMKTGTCKFG 120 SNCKYHHPKQ DGSVQPVMLN SNGFPLRPGE KECSYYMKTG QCKFGSTCKF HHPEFGGIPV 180 TPGIYPPLQS STVPSPHPYA PLTNWQMGRP PVVPGSYMPG SYTPMMLSSG MIPLQGWSPY 240 PASVNPVASG GAQQTVQAGP MYGIGHHGSS STIAYGGPYM PYSSSTIQSS NNQQEHGFPE 300 RPGQPECQYY MRTGDCKFGA TCKYHHPRDW SSPKSNYMFS PFCLPLRPGA QPCSYYAQNG 360 YCRYGVACKY DHPMGTLGYS SSPFPLSDVP IAPYPLGFSI ATLAPSSSSQ DLRPEYISAK 420 DPSVNQVGSP VAASEPSGSI LPKGVFPPDT VMRAQANTTT GGSSSPGGGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371626 | 0.0 | AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200471.1 | 0.0 | zinc finger CCCH domain-containing protein 6-like isoform X1 | ||||
Swissprot | Q5NAW2 | 0.0 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | W5CS75 | 0.0 | W5CS75_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_2B7B665A9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-125 | C3H family protein |
Publications ? help Back to Top | |||
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