PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3B_1B1E1E2B1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 386aa    MW: 41918.9 Da    PI: 8.5183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3B_1B1E1E2B1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-125783127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          +++++C+ff +tG Ck+G++CkF+H++
  Traes_3B_1B1E1E2B1.1 57 PGEPNCPFFVKTGDCKFGSKCKFNHSK 83
                          5789*********************95 PP
2zf-CCCH25.91.7e-08131151425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++C+++a+ G Ck G +CkF+H
  Traes_3B_1B1E1E2B1.1 131 KPCPHYAK-GKCKLGTNCKFIH 151
                           59******.************* PP
3zf-CCCH26.51.1e-08205230126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+f+ +tG C yG +C+F+H+
  Traes_3B_1B1E1E2B1.1 205 PGEVDCSFYIKTGSCMYGRTCRFNHP 230
                           57899********************8 PP
4zf-CCCH35.12.3e-11275299226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++  C+f+ +tG+Ck+ +rCkF+H+
  Traes_3B_1B1E1E2B1.1 275 GETVCDFYKKTGFCKFSERCKFHHP 299
                           6789********************9 PP
5zf-CCCH39.21.1e-12332355427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           e C ++++tG Ck+G +CkF H+p
  Traes_3B_1B1E1E2B1.1 332 EACAYYMKTGACKFGVQCKFDHPP 355
                           78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.845684IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-55683IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-95883IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-56283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859128154IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-4128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5129154IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6131151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5131153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549204232IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021204231IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5206230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5208231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7272301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136273301IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6273300IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5278299IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6328355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601328356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5331354IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10332355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4332353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
NCHTSDLCSL ISFVVFQSFG TTWQLYLVSC IPPKLYFACL KLILQGTKAG ESYPERPGEP  60
NCPFFVKTGD CKFGSKCKFN HSKKKDDGTV AGPGDKESLF SGNSTLPVKP SEPCPESLIS  120
GNSTLPVKPS KPCPHYAKGK CKLGTNCKFI HAKDMEAPSS GGNESENTAT AEAAGHHGAA  180
HDSVSAKKSA PVALEHNSKG MPIRPGEVDC SFYIKTGSCM YGRTCRFNHP GRHIQASVVP  240
GEMLNPAAKF LPSFDFRVTH VPIEPEPITY PQRPGETVCD FYKKTGFCKF SERCKFHHPV  300
DRSAPDSIAK WEPSQQPVTL TVAGFPRRED AEACAYYMKT GACKFGVQCK FDHPPLGEAI  360
AKVSKHGEGK EGGKKKAVGL SYVLEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516310.0AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200959.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ61e-121C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A446NI920.0A0A446NI92_TRITD; Uncharacterized protein
TrEMBLM7ZHK60.0M7ZHK6_TRIUA; Zinc finger CCCH domain-containing protein 8
STRINGTraes_3B_1B1E1E2B1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-79floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]