PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3B_089C0C2EB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27152.8 Da PI: 7.1009 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 70 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ +hn+ Er RR+++N+ ++ Lr+llP++ + +Kls ++ ++ +YI +Lq Traes_3B_089C0C2EB.1 70 RKISHNAYERDRRKELNELYSDLRSLLPED---DRTKLSIPITVSRVLKYIPELQ 121 6889*************************9...9******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-15 | 68 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.313 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.29E-10 | 69 | 125 | No hit | No description |
Pfam | PF00010 | 1.3E-10 | 70 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 70 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-8 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGHHYQLFED PFASSMSLLE PDIFSGTGVH HHLAPSMQWL GLGNHGIPVA PTVNNGTSSG 60 GDGDGSGSHR KISHNAYERD RRKELNELYS DLRSLLPEDD RTKLSIPITV SRVLKYIPEL 120 QKQVEGLEKK KEELTRASCK PGVLTMRENT APIVSATCID DRDIMVQVGL VSTMAGDLPL 180 SKCINVLENE GLRLISSSTS AFQNRTFYSL HLQRTQRTMS KECPAFCEEL ENVMKQKAGV 240 RLHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination (PubMed:16887895, PubMed:17559517, PubMed:21331630, PubMed:26224556). Promotes the accumulation of mugineic acid family phytosiderophores (MAs) (PubMed:17559517). Required for ethylene-mediated signaling during iron deficiency responses (PubMed:21112958). Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain (PubMed:21331630). {ECO:0000269|PubMed:16887895, ECO:0000269|PubMed:17559517, ECO:0000269|PubMed:21112958, ECO:0000269|PubMed:21331630, ECO:0000269|PubMed:26224556}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced in both roots and shoots during iron (Fe) deficiency stress (PubMed:16887895, PubMed:18025467, PubMed:19737364, PubMed:21112958, PubMed:21331630, PubMed:24280375). Ethylene enhances the iron deficiency-mediated induction (PubMed:21112958). Induced by arsenate (AsV25 and AsV50); this induction is repressed by nitric oxide (NO) (PubMed:26793232). Accumulates under cadmium (Cd) stress; this induction is inhibited by the DNA methyltransferase inhibitor 5-aza-2-deoxycytidine (Aza) (PubMed:27412910). {ECO:0000269|PubMed:16887895, ECO:0000269|PubMed:18025467, ECO:0000269|PubMed:19737364, ECO:0000269|PubMed:21112958, ECO:0000269|PubMed:21331630, ECO:0000269|PubMed:24280375, ECO:0000269|PubMed:26793232, ECO:0000269|PubMed:27412910}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996299 | 0.0 | HE996299.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_160787. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193392.1 | 1e-164 | transcription factor ORG2-like | ||||
Swissprot | Q0JFZ0 | 3e-92 | IRO2_ORYSJ; Protein IRON-RELATED TRANSCRIPTION FACTOR 2 | ||||
TrEMBL | A0A3B6FXS9 | 1e-170 | A0A3B6FXS9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QG28 | 1e-170 | A0A446QG28_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_089C0C2EB.2 | 1e-171 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3280 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-29 | bHLH family protein |