PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_CFFF0B2BC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 359aa    MW: 38448.7 Da    PI: 8.6198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_CFFF0B2BC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-081181027
                           GGTS--TTTTT-SS-SSS CS
                zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                           +++GtCk+G++Ck++H++
  Traes_3AS_CFFF0B2BC.1  1 MKNGTCKFGSNCKYNHPR 18
                           89**************96 PP
2zf-CCCH35.32e-113963327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++ +tG+Ck+G++CkF+H++
  Traes_3AS_CFFF0B2BC.1 39 EKECSYYIKTGHCKFGSTCKFHHPE 63
                           689********************96 PP
3zf-CCCH38.81.5e-12193219127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+++++tGtCk+G++Ck++H++
  Traes_3AS_CFFF0B2BC.1 193 PGQPECHHYMKTGTCKFGSTCKYNHPQ 219
                            5789*********************97 PP
4zf-CCCH25.81.9e-08242264426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C ++++ G+Ck+G+ CkF H+
  Traes_3AS_CFFF0B2BC.1 242 QPCLYYSQHGFCKFGPGCKFDHP 264
                            69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.127119IPR000571Zinc finger, CCCH-type
SMARTSM0035629118IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-6118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63664IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0143664IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-43663IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-83963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-44263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197192220IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5192219IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6195219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389238266IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5238265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6240268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4242263IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-6242264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKNGTCKFGS NCKYNHPREG GSVQPVVLNS CGYPLRLGEK ECSYYIKTGH CKFGSTCKFH  60
HPEGPEHGVV SETPNMYPQV QQLPVSSPLP YPPLASWQLG RPSVLPGSFF PGSYPPMMHP  120
SAVMPMQGWN PYMPPINQVA SAGGQQTVQA GPLYGLSHQG PPSAVAYGSN YASLSSSTWP  180
SSDKQEVVFP ERPGQPECHH YMKTGTCKFG STCKYNHPQY LSTPRSNYML SPLGLPIRPG  240
AQPCLYYSQH GFCKFGPGCK FDHPLGALSY SPSASSLGDV PIAPYPLSLP VAPMAPSPLS  300
SGLRPDYILA KDSSANQPAS PGTTFGNAGQ LSKIYAPHML LRPPTSATGA TVTIHGGEF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553790.0AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17.
GenBankAK3612940.0AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190679.10.0zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A453EMT40.0A0A453EMT4_AEGTS; Uncharacterized protein
STRINGTraes_3AS_CFFF0B2BC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-88C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]